Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0863 ATGATCTGGTGGGATAGCTTGATTCTGATGCAAGGACAAAGGAGGACTGTTGGGTCGTTCCCAGCAATTGTTAGTATGATGCAAGGGCCCAGTTCTAGTGGCACTGATATGAACCACCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCTGTTTGTCAGATTATAGGGGATCTTCTGGTGAGACTGCATGTTTACGTGGTACTGGTCATAATGTTCAGAGCTTCAGTGGCTGGAATACTGGTGAATCTAGTTCAAGACTCAATCTGATCAACCAAGTCAATGATGAAGGTCTAAAATCAGAACATGGGCTGTCTTCTTCGTATAATGCTGCTACCGAGGATGATCTCAGGTCTGAGGAAGGACAATTCAAAGCAAATAATGTAATTTTTCCTGTTAGTTCAAATACTAATCTACATGGCAATCAATCTAGAGTTCACCCTTCCTTTTTGCAAGGTTCCAGTTCTACTCATATTAACCAGAATATTAGTCTAGATATGGGGCATGTAGCTAATGCTGCTGATCGTGGGAAGGGCAAAGAAGCTGGTAGTAGTGTTAATGCCAACAATACTAGTGGAATAGACAGAGAAAAGACATTGTTTGGCAGTGCTTCATGTAATCACACAGGAGCTTCATCTGAAAGCTCTGGATACATGGCTTGGGGTGATAGTGCTAATTCAAGTTCTTCTTTAGTTAATTGGGGTCCTTCCTGCAAGAGAAAGGCTCTTGAAGGTAGTTCTAGGCAACTGTGTTCTGGAGGAAGCTCAAGCACTCTTGTACAATCCGGAAATGGTTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCCAGCGACTTAACTGATTCTACACCTATAGAAGATATTCCTGTTACTAGTCCTCCATTATTTCAGAATGCAACAAATGAAGAGCGACAAGAAGCTCCCAATGGATTTCCTTTGATAAGTATTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTCGATAGAAGAATGAGCCATCTACAGCATCAGGAATCTGTACCTCTCAATTTACCATCAACAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAAGCACCTGGCTCTCACTCAATCAATGATTCGTTGGAGTTGAGGTTAACAGCTGGAGGGACATCTTCTGCTAATTCTGGCGCTTCTCTGAACCAGTCACCTGCCTTGCGCATCCATTCTTTTCCTTGGAACAGAACTGCCAATCCTAGAGGGGCCAGATCTTCAACTTCTTATAACTCTGGAGAAAGAGCCGTGCGCGAAGATTTTAATTTGAGAATGTTTCCAAGAGATAGTACGGAACACCCCATGAATGTGCCTGCATCTTCAGGACACGAACCTATTGGTTGGCATACACCATCTGGTAATGTGAACAATTCTGGAGGTGCACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGTTCACTCTCCCGCTAACCGTAGCTGGATTTTTAATCATGAAGTCCCAGCAGAAAATATGCAGAGTGTGTCAGAGTTCAGTCCTTGGTCCCTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGCCCATTCTGCCCCATCTTCTTCTGGTCCTACTTCATTTACCCAGGGTTCTAGCAGCAACCAATCATACGCAAGAACAGCATTGGTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGGTGGTCCCCATTCACTGCGAGCATTAACCTTTGACAATGAGGGGAGACGTCGACTAATATCTGAGATTCGCCAAGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGGTCTTTGACCACCCTTTCTTATATCATGGCATGGCTGAAATGCACGACAGGCACAGAGAAATGCGCCTTGATGTCGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCATATAGGAGACGTGAGCACTGGATTGAATGAGGATGTCATCATTAAGTTGATGAAACAGAGAATTTACGTGCGTGCCATTATCATGACAGACTCTTATACAGATCTGGAACCTTGTTGTATCTGTCAGGAGGAATTTTCTGATGGGGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGGTTGCATTAAGCAGTGGCTAATGCAGAAGAACCTGTGTCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2190 0.4379 MIWWDSLILMQGQRRTVGSFPAIVSMMQGPSSSGTDMNHQSSLNHVQNAVDFCLSDYRGSSGETACLRGTGHNVQSFSGWNTGESSSRLNLINQVNDEGLKSEHGLSSSYNAATEDDLRSEEGQFKANNVIFPVSSNTNLHGNQSRVHPSFLQGSSSTHINQNISLDMGHVANAADRGKGKEAGSSVNANNTSGIDREKTLFGSASCNHTGASSESSGYMAWGDSANSSSSLVNWGPSCKRKALEGSSRQLCSGGSSSTLVQSGNGCWPTDPVDLNASSDLTDSTPIEDIPVTSPPLFQNATNEERQEAPNGFPLISIAENVERPLRNFDRRMSHLQHQESVPLNLPSTGSARHHNHSSLHQAPGSHSINDSLELRLTAGGTSSANSGASLNQSPALRIHSFPWNRTANPRGARSSTSYNSGERAVREDFNLRMFPRDSTEHPMNVPASSGHEPIGWHTPSGNVNNSGGAPPPSWIGSSSNVHSPANRSWIFNHEVPAENMQSVSEFSPWSLFPSISSASGVHNAHSAPSSSGPTSFTQGSSSNQSYARTALVMERRGGDVLSGGPHSLRALTFDNEGRRRLISEIRQVLMAMRRGENLRAEDYMVFDHPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEEHIGDVSTGLNEDVIIKLMKQRIYVRAIIMTDSYTDLEPCCICQEEFSDGENVGSLDCGHEFHSGCIKQWLMQKNLCPICKTTALAT* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0863 729 MobiDBLite consensus disorder prediction 408 423 - -
Gso2g0863 729 MobiDBLite consensus disorder prediction 402 423 - -
Gso2g0863 729 SUPERFAMILY RING/U-box 681 726 - -
Gso2g0863 729 MobiDBLite consensus disorder prediction 521 544 - -
Gso2g0863 729 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 729 IPR045191 GO:0061630
Gso2g0863 729 MobiDBLite consensus disorder prediction 275 307 - -
Gso2g0863 729 ProSiteProfiles Zinc finger RING-type profile. 682 723 IPR001841 -
Gso2g0863 729 MobiDBLite consensus disorder prediction 176 195 - -
Gso2g0863 729 CDD RING-H2_TTC3 681 723 - -
Gso2g0863 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 727 IPR013083 -
Gso2g0863 729 SMART ring_2 682 722 IPR001841 -
Gso2g0863 729 MobiDBLite consensus disorder prediction 274 314 - -
Gso2g0863 729 MobiDBLite consensus disorder prediction 343 368 - -
Gso2g0863 729 Pfam Ring finger domain 682 723 IPR001841 -
Gso2g0863 729 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 11 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0863 Gso-Chr2 9805804 9812606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0863 27 729 C3H Transcription Factor Family AT2G15530 36.351 7.36e-107 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0863 - K19041 gmx:100820322 1479.92