Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0862 ATGACCTTGTTGACCGTGGAAGATCAAAGTTTGCATGATATGAACTTCTTGTGGGAAAATCATTCATGGGATCCCTCCAATTCTGATAATTCGGGTGAAAGTAAAGAAAACATGAAATCACTTGATCAGGTAGAAGAAAAAGATGAAGCTCTCATGAATAAGAAACGAAATCGAGACCAAGGCAATATTACTAGTGGTGAAGGGAAAGGTGAAAAATGTCGTGAATCTGATCATGAAATGCATATATGGACCGAGAGAGAAAGGAGGAAGAAAATGAGGAACATGTTTGCCAGTCTTCATGCTTTGCTTCCACATCTTCCTTCCAAGGCTGATAAATCAACCGTTGTGGATGAAGCAGTGGCATACATTAAAAATCTTGAGAAAACCCTGGAAAAGCTAGAGAAACAGAAACAAGAAAGGGTCCAATGTGTCTCCACTTTTGGGTGTGAACCATCCATGTTTGTGACTGGTCAGGGATCTTCTAATAACAACATTTCCAATGCAATAATTGGAACTACTTCAAATGCACTTTCATTCCCTGTAGCTTTTGACAAGACTTGGGCTTCTTCAAATTTGGTCTTGAACATTTTTGGAGATGAAGCCCAATTCTCCATTTGCACAGCCCATAAGCCAGGCCTCATGACTACCATTGGTTTTGTGCTGGAGAAGTACAAGATTGAGGTCATAACTGCCAACATTTCGTGCATTGGTTATGGAAATGCTTGCATGATTCAAGCCCATGGAAAACGAGTTTCACATCAGTTCCTAGATGCAAATTCAGTAGAGGAAATTTACAAGCAAGCGGCAGGAGAGATTATGCTATGGATCGGTTAA 834 0.4029 MTLLTVEDQSLHDMNFLWENHSWDPSNSDNSGESKENMKSLDQVEEKDEALMNKKRNRDQGNITSGEGKGEKCRESDHEMHIWTERERRKKMRNMFASLHALLPHLPSKADKSTVVDEAVAYIKNLEKTLEKLEKQKQERVQCVSTFGCEPSMFVTGQGSSNNNISNAIIGTTSNALSFPVAFDKTWASSNLVLNIFGDEAQFSICTAHKPGLMTTIGFVLEKYKIEVITANISCIGYGNACMIQAHGKRVSHQFLDANSVEEIYKQAAGEIMLWIG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0862 277 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 126 IPR011598 GO:0046983
Gso2g0862 277 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 139 IPR036638 GO:0046983
Gso2g0862 277 Coils Coil 116 143 - -
Gso2g0862 277 MobiDBLite consensus disorder prediction 19 78 - -
Gso2g0862 277 Gene3D - 73 146 IPR036638 GO:0046983
Gso2g0862 277 SMART finulus 84 132 IPR011598 GO:0046983
Gso2g0862 277 MobiDBLite consensus disorder prediction 20 34 - -
Gso2g0862 277 MobiDBLite consensus disorder prediction 35 62 - -
Gso2g0862 277 CDD bHLH_AtbHLH_like 81 134 IPR045239 -
Gso2g0862 277 PANTHER - 14 275 IPR044278 GO:0003700|GO:0006355|GO:0009960
Gso2g0862 277 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Gso2g0862 277 PANTHER TRANSCRIPTION FACTOR BHLH95 14 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0862 Gso-Chr2 9796255 9799644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0862 19 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.213 4.14e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0862 HLH 4.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0862 - - gmx:102665879 533.872