Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0856 ATGGCTACCCCAAGTAAATCAACACCAATAATAGCGTCAGACACTTTGGAACAAAAAGGGAAGACTATGACTGAATCAAACGCAAACATTCTTCAATGTCCTTTAAACCAGCAACTCTATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAAAATTGTCCAGTTCCATGTGATGTGCGCCCTGAGGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGCGTTAAACTTATTGATGTTCCCAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATCATGCTTATATCTGGGGATGTTGATTTTGCACCAGCACTTCACATTCTTGGTCAGCGGGGATATACTGTAATTCTTGTCATCCCTGCTAACGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTTTGGGACTGGCCTAGTGTGGTTCGTGGAGAAGGCTTTGTGCCCCCTTCGAAGGCTTTAGTGCCACCACGTGGAGGTCCAGTTGAACTTGCTGGACACTTTATGGGATGCCATATCAATGACAACTCTGATGGACAAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAGCTATTATAACTCAAGGGAATTCTCAATGGTGTCACAATCTCTGTCTGAATACAACAATGGCACATTGAACACGACTTGCTTGCCTACAACTATGAGAACACATAGCCTTCCATCTGTATTGAATGATGTTCCAGGAGGGTCTATGATGCCTTCGAGTGACCTTAATGAATGTCAGTTATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTCGAACTTTTTGGAGGATGCCTACCTCTGGCCCGAGTTCCAGCAGAGTACCAGAAACTTTATGGGAGACCTCTTTATGTATCTGAATATGGAGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGCGATGCCCTGGCTGTGGAAGGGAAAGGGAATCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCTCCTCTCTCTCTGGCAAAGAAAGACAAGAAAGGAAAGGAAGCCCAGGAAGAGAATGTGAATATTGTCACTGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATCGAAGAGCATGATGAAAGAAGTTGCATAGGGAAGGGGAATCAGGGTAGAGCTGCCAAATGTGAAATTGATGACCGTTTTATTGAGCAATTTAAGTATGAGCTGCAAGAGATTCTGGTAAGCTATTCTTGTCGCATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAGCGTTACAAGAAACAACTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAAGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTACTGCATGAGGAACCAGTAAGCAAGAAGAAGTTCCTGGCTGCTGTAGGTGGTTAG 1599 0.439 MATPSKSTPIIASDTLEQKGKTMTESNANILQCPLNQQLYSSLDGPVAILWDIENCPVPCDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPANVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRGGPVELAGHFMGCHINDNSDGQNEEEAIVYRGMSQSYYNSREFSMVSQSLSEYNNGTLNTTCLPTTMRTHSLPSVLNDVPGGSMMPSSDLNECQLWVQPGDLNGLKGQLVRLLELFGGCLPLARVPAEYQKLYGRPLYVSEYGAIKLVNLFKKMGDALAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKEAQEENVNIVTGGCSSDEFSDEERVVIEEHDERSCIGKGNQGRAAKCEIDDRFIEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSKKKFLAAVGG* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0856 532 Pfam OST-HTH/LOTUS domain 459 520 IPR025605 -
Gso2g0856 532 Pfam OST-HTH/LOTUS domain 315 380 IPR025605 -
Gso2g0856 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Gso2g0856 532 CDD LOTUS 458 520 - -
Gso2g0856 532 PANTHER LIMKAIN B LKAP 34 527 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso2g0856 532 Gene3D - 44 192 - -
Gso2g0856 532 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Gso2g0856 532 PANTHER - 34 527 - -
Gso2g0856 532 CDD LOTUS 313 382 - -
Gso2g0856 532 CDD PIN_limkain_b1_N_like 46 172 - -
Gso2g0856 532 Gene3D - 312 381 IPR041966 -
Gso2g0856 532 Gene3D - 454 525 IPR041966 -
Gso2g0856 532 Pfam NYN domain 46 186 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0856 Gso-Chr2 9709724 9713130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0856 43 197 C2H2 Transcription Factor Family AT5G61190 41.290 1.21e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0856 - - gmx:100818186 1081.63