Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0807 ATGGCTACCACCACCACTCCTGCTAGATCTTTTCTCCAAGTCGCCGCTACAGAGGAGGCCGCGCCGCCTCTCAGAGTCGTTCAGATTGAAGGACTGGTTATTCTGAAGATAATTAAGCATTGTAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAAGAGGATGAGGAAATTGAAGCTGATGGTGCTAATTATCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAACAACACCGTTGGGTGGTACCAGTCTACATTGCTTGGCTCCTTTCAGACTGTGGAGCTTATTGAAACCTTTATGAACTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTTCTAGCTCTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCGATCAAAGTTTCAAATTCTGCACTTATCAGTGCCTTTATGACAGAGCTAGAACCTGATACTCCAGTCACCCAGTGTGATTATGATCGCTTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATACAGAATTTTTGATTGAATGCATGGATGACTTGTCACTAGAACAACAAAAGTTCCAATTCTACTATCGGAGCCTGTCTCGTCAACAAGCTCAGCAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCGGAGGAAGATCCTTCAAATCCAATTTTCAAGCCGCTCCCAGAGCCATCCCGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAATCAAATCAATGGGGTGTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA 1020 0.4422 MATTTTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNTEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0807 339 Gene3D Cytidine Deaminase, domain 2 3 215 - -
Gso2g0807 339 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 6 338 - -
Gso2g0807 339 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 22 339 IPR027524 GO:0003743|GO:0005737|GO:0005852
Gso2g0807 339 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 25 128 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso2g0807 339 CDD MPN_eIF3h 25 288 IPR027524 GO:0003743|GO:0005737|GO:0005852
Gso2g0807 339 ProSiteProfiles MPN domain profile. 27 160 IPR037518 -
Gso2g0807 339 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 6 338 - -
Gso2g0807 339 SMART pad1_6 26 159 IPR000555 GO:0005515|GO:0008233|GO:0008237
Gso2g0807 339 MobiDBLite consensus disorder prediction 271 296 - -
Gso2g0807 339 Pfam C-terminal region of eIF3h 146 338 IPR045810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0807 Gso-Chr2 8657367 8661378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0807 90 339 Eukaryotic Initiation Factors Gene Family AT1G10840 84.400 7.07e-158 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0807 K03247 - gmx:100795273 658.292