Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0784 ATGAAGAGAGAAAGAGAGGTTGATAGCTTAACCATGGCAAATTGTTTGATGTTGCTTTCTCGTGGAGGTGATCAATTTGAGGCCACCTACTCATCAAGCACTTCAATGAACAACCGTGTCTTTGAGTGCAAAACATGTAATAGGCAATTCCCTTCATTTCAGGCACTTGGTGGCCACAGGGCTAGTCATAAAAAGCCTAGGTTGATGGCTGGAGATAATATTGAAGGCCAATTGCTTCATGATTCACCCCCAAAGCCTAAGACTCATGAGTGTTCCATTTGTGGGTTGGAGTTTGCTATAGGGCAAGCCTTGGGAGGCCACATGAGGAGGCATAGAGCTGCGAATTTGAATGGAAACAACGTGTACAATTCTGCTACGGCTACGAGTAGTAGTAGTGGCGGTAGTAGTTTTGATTCATCACCCAAGAAGAAAGCTGACAACAAGAGAGTTTTGGTTTTGGATTTGAATCTGACACCCTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTACTTTTGTTGATTATTTGTATTGA 543 0.4236 MKREREVDSLTMANCLMLLSRGGDQFEATYSSSTSMNNRVFECKTCNRQFPSFQALGGHRASHKKPRLMAGDNIEGQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGNNVYNSATATSSSSGGSSFDSSPKKKADNKRVLVLDLNLTPFENDLEFLKIGKPTTFVDYLY* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0784 180 SUPERFAMILY beta-beta-alpha zinc fingers 39 111 IPR036236 -
Gso2g0784 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Gso2g0784 180 PANTHER ZINC FINGER PROTEIN ZAT12 11 166 - -
Gso2g0784 180 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gso2g0784 180 SMART c2h2final6 41 63 IPR013087 -
Gso2g0784 180 SMART c2h2final6 89 111 IPR013087 -
Gso2g0784 180 Pfam C2H2-type zinc finger 89 113 - -
Gso2g0784 180 Pfam C2H2-type zinc finger 40 66 - -
Gso2g0784 180 PANTHER ZINC FINGER PROTEIN ZAT5 11 166 - -
Gso2g0784 180 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gso2g0784 180 Gene3D Classic Zinc Finger 21 115 - -
Gso2g0784 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0784 Gso-Chr2 8383360 8384183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0784 12 171 C2H2 Transcription Factor Family AT2G28710 45.238 1.48e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g0784 zf-C2H2_6 9.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0784 - - gmx:100500371 355.14