Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0776 ATGGCCGGCGGCATCGACATGTCCCTCGACGACATTAAGAAGCGTTCAGCCGCCGCCGTGGCTTCTCGCCGCCGATTCACGGTTGTTCACAACCCGGCCAGAACGACGCCGTACCCGATTCCGCAGGTAAGGCAACAGAGCATGGTTGCATTATTTCCAGAAATGGTTTTGGAGGAGTCAGGTGCGGCTAAGATTGAAAGTGGCACCAAGCTCTATTTATCTAACTTGGATCATGGAGTTACCAACGATGATATCAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGCTACACTATTCATTATGATCAGAGTGGAAGATCAAAGGGAACTGCAGAAGTTGTGTTCGTGAGGCATTCTGATGCTTTATTAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAGCCATTGCAAATTGAGCTTGTTGGAACAAGTTTGGCTACTCCTGCTGTCGCTCCTCTTTGTCAAAATAACTTGATGGGAAGACCAAATGATGTCCATTTTAGCACACGAGGAAGGGTTGGCGATAGTGGGTTTCACAATGACTTTGCACAGGGCTACCTTCCAAGGGGCCGTGGAGAAGAGAAGGACCATATTCGAAAGGTGTCTTTTAGAGATCTTGATCATAGCTTTGAGAGGTTTCACCGCACTCAGAGTCAGAGAAGCTACGCAAAAGTAAATGGCAATTTTGGAAAGGTGACTGCTAAAGATCTTGATGATGACTTGGAGAGGTATCACTTAGAGGCTAAGCGGATTAAAAAGCAAAATGGAAAGTGA 783 0.461 MAGGIDMSLDDIKKRSAAAVASRRRFTVVHNPARTTPYPIPQVRQQSMVALFPEMVLEESGAAKIESGTKLYLSNLDHGVTNDDIKLLFSEEGELKSYTIHYDQSGRSKGTAEVVFVRHSDALLAIKKYNNMRLDGKPLQIELVGTSLATPAVAPLCQNNLMGRPNDVHFSTRGRVGDSGFHNDFAQGYLPRGRGEEKDHIRKVSFRDLDHSFERFHRTQSQRSYAKVNGNFGKVTAKDLDDDLERYHLEAKRIKKQNGK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0776 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Gso2g0776 260 PANTHER THO COMPLEX SUBUNIT 4A 6 250 - -
Gso2g0776 260 SMART rrm1_1 70 142 IPR000504 GO:0003723
Gso2g0776 260 CDD RRM_THOC4 69 143 - -
Gso2g0776 260 Gene3D - 57 234 IPR012677 -
Gso2g0776 260 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 250 - -
Gso2g0776 260 Coils Coil 237 257 - -
Gso2g0776 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 139 IPR000504 GO:0003723
Gso2g0776 260 SUPERFAMILY RNA-binding domain, RBD 64 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0776 Gso-Chr2 8285807 8288251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0776 68 144 Eukaryotic Initiation Factors Gene Family AT2G23350 37.662 2.07e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0776 K12881 - gmx:100785926 514.998