Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0729 ATGTTGTCCCTCTCCTCCACTACCACCATCATCACAGCCACCATCCTCGTCTTCTATCTCCACCATACGACGTCATTACCACCCCATGCACAACTCTCTACCTGCCACGTGACCTCCTTCAACTGCGGCACCATCACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTCCTTCTGTGGGCCACCACAGTTCCATTTGAACTGCCAAAACGGTATCGTTCCCGAGTTGATCATCTCATCAGTGAGTTACCGAGTCATTCATGTAAACTCGGAGGCTCACACTCTCAACTTAGCAAGACTAGACCTTTGGAACGAGACATGCACCAATGTGTACGTTAACTCAACTTTTGATGGCCCCACATTCAGCTACGGTTCGGGGAACCAGAACCTCACTTTGTTTTACGAGTGCGAAGCCTCTTCACGGATCACCGAAACGCCAGAAAATTTGTTTCACTGTTGGAGTAACGGGGATAAGAATAACTCTTATTCTTTGGTTGGTCCGTTTCCTTTGGACCCTATTCTTGAGGTTGTTGAATGCGATGAACATGTTAAAGTGCCAATTCTTATAGAGCTGGCAGATAGGCTCGTGAAAAACCGGTCTTTGCTTGGGGAGGTTTTGATGAAGGGGTTTAATGTGAACTATATGAATCCTTATGAGACTGAGTGTTTTGAGTGCCTTGCTTCTGGTGGCGTGTGTGGGTTTGACTCTGATAACGATGAACCCATTTGTATTTGTGGGGATCAGTTGTGTGCAACTCCAGGTAGCAGCAAAGTAGCTGTTGCAATAGGCGCTAGTGTAGGAGCAGTTGGAGCCCTTGTTGTCATTCTTGGATGTGTGTACTTTGTGTTGCAAAGAAGGAGAAAAATTGCTTATAATAAACAAAGAAGCAGCATGGACCTCTTCATGCCTCCTTCAAGCGGAGACACTTTTGCATCTACAACTAACACGTCTCAAAGTCTATCTTCTTACCAATCCTCCAACACTGACCCAATGCCGCCGAGGAGTAACTACTTTGGAGTCCAGGTCTTTACCTATGAGGAACTAGAGGAAGCTACCAAAAACTTTGACTCTTCTAAAGAACTTGGTGAGGGAGGTTTTGGCACTGTCTACAAAGGTGAACTCAAAGATGGACGTGTAGTTGCAGTGAAACGCCACTATGAAAGCAACTCTAGACGTATTGAGCAGTTCATGAATGAAGTCCAGATTCTAGCCCGGTTAAGGCACAAGAGCCTGGTGACACTCTTTGGATGCACCCATAGACATAGCAGAGAGCTTCTCCTTGTTTATGAATTCATACCCAACGGAACAGTGGCTGATCATCTTCAAGGAAGAAGCACAAAATCAACTAATTTACTCCCTTGGCCTATAAGATTGAACATTGCAGTTGAAACAGCTGAGGCTCTAGCCTATCTACATGCAAAGGGTGTCATACACCGCGATGTTAAAACCAACAACATTCTCCTGGATGATAACTTCCGCGTCAAGGTTGCTGATTTTGGTCTCTCAAGGGATTTCCCAAACCATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAGTATTATCAGAGCTACCAGCTCACTGATAAGAGTGATGTTTATAGCTTTGGAGTGGTCTTAGTTGAGCTGATATCATCATTGCAAGCTGTGGACATCAATAGGAATCGCAGTGATGTGAACTTGGCAAACATGGCTATCAATAAAATTCAGAACCAGGAACTGCTTGAGTTTGTTGATCCTTATCTTGGGTTTGAGAGGGATTATGCTATTAGGAGGATGACAACAGGAGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGGAAAGAGAGATCAGACCCTCCATGAATGAGGTGGTGGAGATCTTGAGAGGAATCAATAGTAGTGATGGGCTTGGCGCACGGGAAGAGACAAAAGTATTGGAAGTTAGGACAGATGAAGCTATACTTCTGAAGGTTTCCCCGGTTTCACCAGATTCCGTTGTTGATAAATGGGTTAGCGGTTCCTCTGTATCTAATTCCTCATAG 2049 0.4549 MLSLSSTTTIITATILVFYLHHTTSLPPHAQLSTCHVTSFNCGTITNLSYPFTGGDRPSFCGPPQFHLNCQNGIVPELIISSVSYRVIHVNSEAHTLNLARLDLWNETCTNVYVNSTFDGPTFSYGSGNQNLTLFYECEASSRITETPENLFHCWSNGDKNNSYSLVGPFPLDPILEVVECDEHVKVPILIELADRLVKNRSLLGEVLMKGFNVNYMNPYETECFECLASGGVCGFDSDNDEPICICGDQLCATPGSSKVAVAIGASVGAVGALVVILGCVYFVLQRRRKIAYNKQRSSMDLFMPPSSGDTFASTTNTSQSLSSYQSSNTDPMPPRSNYFGVQVFTYEELEEATKNFDSSKELGEGGFGTVYKGELKDGRVVAVKRHYESNSRRIEQFMNEVQILARLRHKSLVTLFGCTHRHSRELLLVYEFIPNGTVADHLQGRSTKSTNLLPWPIRLNIAVETAEALAYLHAKGVIHRDVKTNNILLDDNFRVKVADFGLSRDFPNHVTHVSTAPQGTPGYVDPEYYQSYQLTDKSDVYSFGVVLVELISSLQAVDINRNRSDVNLANMAINKIQNQELLEFVDPYLGFERDYAIRRMTTGVAELAFRCLQQEREIRPSMNEVVEILRGINSSDGLGAREETKVLEVRTDEAILLKVSPVSPDSVVDKWVSGSSVSNSS* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0729 682 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
Gso2g0729 682 Gene3D Phosphorylase Kinase; domain 1 330 433 - -
Gso2g0729 682 Gene3D Transferase(Phosphotransferase) domain 1 434 654 - -
Gso2g0729 682 CDD STKc_IRAK 363 633 - -
Gso2g0729 682 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 682 IPR044652 -
Gso2g0729 682 ProSiteProfiles Protein kinase domain profile. 357 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0729 682 Pfam Protein kinase domain 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0729 682 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 1 682 - -
Gso2g0729 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Gso2g0729 682 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Gso2g0729 682 MobiDBLite consensus disorder prediction 310 334 - -
Gso2g0729 682 SUPERFAMILY Protein kinase-like (PK-like) 337 633 IPR011009 -
Gso2g0729 682 SMART serkin_6 357 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0729 682 Pfam Wall-associated receptor kinase C-terminal 176 250 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0729 Gso-Chr2 7714333 7717493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0729 40 682 Receptor kinase-like Gene Family AT1G25390 43.096 2.03e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso2g0729 Pkinase 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0729 - - gmx:100780940 1296.95