Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0718 ATGGCTATGTTTGATCTCAATGTTGACATCAACCACTGTGATGCTGATGCTGACTCAAGCTGTGATCAAAAGGGATTGGTGCTGCAAAGTTTCCCACCTGAAATCTCAGATTCCAGGACCTCCAGCTCCTCTGTGTGGAACCCTGTAGAGGAAGATTCCTCAAACAATTCCTCTCCCTTGATTTTTGACATACTCAAGAAAGAGAGGGATGAGTCAGAGTTTGATGCAGCCACTGAAAGGGTCAATAAGGAGCAAAACATGGCACCACAAGAGGCAGAGATAGTGGCAAGGACACTTTTCCCTGTGACTGCTGCTGTTGATAAAGGAGTTAGAGTGCCTGATTTCAAATTGGGGCTGTGGGGGAAGACTGAATGCTTGAACTTGTCCTTACCAGAGCCTGATGGACAAAATGGACTCAGAACCTTACAGCAGAAGGTACCTCCTGTGAGGAAAAATAGGAGAGGACCAAGGTCTCGCAGCTCGCAGTACCGGGGTGTCACCTTCTACCGCAGGACTGGTAGATGGGAGTCACATATTTGGGATTGTGGGAAGCAGGTTTATTTGGGTGGATTTGACACTGCTCAAGCTGCTGCAAGAGCATATGATAGGGCTGCTATAAAGTTTCGTGGAGTAGATGCTGATATAAACTTTAGTTTGAGTGATTATGAGGAGGATTTGAAGCAGATGAGAAATTTGAGTAAGGAAGAGTTTGTGCTCTTACTTCGTCGACAAATAAATGGAATCTCTAGGAGAAGTTCAACATACAGAGGTGCATTAGCCCTTCGCAAAGATGCTCAAGGAGAACCACGAATGGGACCATTTGTTGGCATGACATGTTATCCTAAGCCATCCATCAATTGTGATGATGGAAAAGCGGAGGCAAGTTTTAAGCCCTGTTCCTATAAGGGAGAAATAATTGTGAATTCCAACATGACAGGCACTTGCCATAATCTTGATTTGAGCCTAGGAATTTCTCCGTCTTCTAAAAGATTGAAGAATAATGACTATAGTGGAGGGTATTCCTTTGGATGTATGACTTGTAAGATACCCGAGGAAAGAGGACCAATGGAGAAGGTCATGGTGGACAGAATAAAAAATGTTCCTTTGCAAAAAATTTCCAACTTGGCTTGGCAACTTTGCAGCAATGGCAGCATTGTCCCAAGGCCATTCCAACCAAATGCAGCATCATCAGGATTCGTCTCTTCTTCTAGCTGTCTCATCACCCGCACTTCCAATCAGCACACATATTAA 1251 0.4428 MAMFDLNVDINHCDADADSSCDQKGLVLQSFPPEISDSRTSSSSVWNPVEEDSSNNSSPLIFDILKKERDESEFDAATERVNKEQNMAPQEAEIVARTLFPVTAAVDKGVRVPDFKLGLWGKTECLNLSLPEPDGQNGLRTLQQKVPPVRKNRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAQAAARAYDRAAIKFRGVDADINFSLSDYEEDLKQMRNLSKEEFVLLLRRQINGISRRSSTYRGALALRKDAQGEPRMGPFVGMTCYPKPSINCDDGKAEASFKPCSYKGEIIVNSNMTGTCHNLDLSLGISPSSKRLKNNDYSGGYSFGCMTCKIPEERGPMEKVMVDRIKNVPLQKISNLAWQLCSNGSIVPRPFQPNAASSGFVSSSSCLITRTSNQHTY* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0718 416 Coils Coil 67 87 - -
Gso2g0718 416 MobiDBLite consensus disorder prediction 32 58 - -
Gso2g0718 416 CDD AP2 161 217 IPR001471 GO:0003700|GO:0006355
Gso2g0718 416 Pfam AP2 domain 162 210 IPR001471 GO:0003700|GO:0006355
Gso2g0718 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 408 - -
Gso2g0718 416 MobiDBLite consensus disorder prediction 33 58 - -
Gso2g0718 416 Gene3D AP2/ERF domain 161 220 IPR036955 GO:0003700|GO:0006355
Gso2g0718 416 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 408 - -
Gso2g0718 416 ProSiteProfiles AP2/ERF domain profile. 162 218 IPR001471 GO:0003700|GO:0006355
Gso2g0718 416 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677
Gso2g0718 416 SMART rav1_2 162 224 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0718 Gso-Chr2 7530459 7535845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0718 148 330 AP2-EREBP Transcription Factor Family AT4G36920 59.701 3.05e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0718 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0718 K09284 - gmx:100776138 838.95