Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0717 ATGCAGTGTTCAAAACTACTGAAGGGAACATACATTTCTCTTCTCAAAAGCTGCAAATCCATGTCCCAATTGAAGCAAATTCAGGCCCACATATTCTGTTTTGGCCTTCAACAAGACAGAGACATCCTCAACAAGCTCATGGCCTTTTCCATGGACTCATCCCTAGGGGATTTTAACTATGCAAACAGAATCTTCAACCACATTCATCACCCCTCCTTGTTTATCTACAACCTCATGATCAAGGCCTTTGTGAAAAGGGGTAGTTTAAGGAGTGCCATTTCTCTTTTTCAGCAGCTGAGGGAACGTGGGGTGTGGCCCGATAACTACACCTACCCTTATGTTTTGAAGGGTATTGGTTGCATTGGGGAGGTTAGGGAAGGGGAAAAGATTCATGCTTTTGTGGTTAAGACTGGCCTTGAGTTTGACCCTTATGTGTGTAACTCCTTGATGAATATGTATGCTGAGTTGGGCCTGGTTGAGGGGTTCACACAGGTGTTTGAGGAAATGCCTGAGAGGGATGCGGTTTCTTGGAACATCATGATTTCGGGTTATGTCAGATGCAAGAGGTTTGAGGAGGCTGTTGATGTTTACCGGCGGATGCAGATGGAGAGCAATGAGAAGCCCAATGAAGCCACGGTTGTGAGCACTCTGTCGGCTTGTGCGGTATTGAGAAATTTGGAGCTTGGCAAGGAAATCCATGATTACATTGCAAATGAACTGGACCTTACTCCTATAATGGGGAATGCTTTGTTGGACATGTATTGTAAGTGTGGGTGTGTGAGCGTGGCCAGGGAGATTTTCGATGCAATGATCGTGAAGAATGTGAATTGTTGGACCAGTATGGTAACTGGGTATGTGATCTGTGGTCAGTTGGATCAAGCTCGGTATTTGTTTGAGAGGAGTCCAAGTAGGGATGTTGTTCTTTGGACAGCTATGATTAATGGGTATGTGCAGTTTAATCATTTTGAAGATGCAATCGCATTATTTGGGGAGATGCAGATCAGAGGTGTGGAACCAGATAAGTTCATTGTGGTTACTCTCCTTACAGGTTGTGCTCAATTGGGAGCTCTGGAGCAGGGCAAGTGGATTCATAATTACATAGATGAAAACAGAATTAAGATGGATGCTGTGGTTAGTACTGCCCTTATTGAAATGTATGCTAAATGTGGTTGCATAGAGAAATCTTTGGAAATTTTTAATGGATTGAAGGATATGGACACGACCTCATGGACTTCAATTATTTGTGGGCTGGCCATGAATGGTAAAACAAGTGAAGCACTTGAGTTGTTTGAAGCAATGCAAACATGCGGATTAAAACCTGATGATATTACTTTTGTTGCTGTTTTAAGTGCTTGTGGTCATGCAGGATTGGTCGAAGAGGGCCGCAAGTTATTTCATTCCATGTCAAGTATATATCACATTGAGCCAAATTTAGAGCACTACGGGTGTTTCATTGACCTTCTTGGTCGAGCCGGACTTTTACAAGAGGCAGAGGAGTTGGTGAAGAAGTTACCAGATCAAAACAACGAAATAATAGTTCCACTTTATGGAGCTTTGCTAAGCGCCTGCCGAACTTATGGCAATATTGATATGGGTGAAAGGCTTGCTACAGCCCTAGCAAAAGTTAAATCCAGCGATTCAAGTCTTCATACACTTCTTGCTAGCATTTATGCTTCTGCTGACAGATGGGAAGATGTGAGAAAGGTGAGAAGTAAGATGAAAGATCTAGGAATCAAAAAGGTGCCAGGATATAGTGCCATTGAGGTGGATGGCTAG 1776 0.4307 MQCSKLLKGTYISLLKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMNMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVDG* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Gso2g0717 591 PANTHER OS06G0597500 PROTEIN 21 589 - -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 409 441 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 75 104 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 248 275 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 144 173 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 443 470 IPR002885 -
Gso2g0717 591 TIGRFAM PPR: pentatricopeptide repeat domain 175 210 IPR002885 -
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 172 IPR002885 -
Gso2g0717 591 SUPERFAMILY TPR-like 148 319 IPR011990 GO:0005515
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Gso2g0717 591 Pfam E motif 526 588 IPR046848 -
Gso2g0717 591 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 21 589 - -
Gso2g0717 591 Gene3D Tetratricopeptide repeat domain 123 235 IPR011990 GO:0005515
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Gso2g0717 591 Gene3D Tetratricopeptide repeat domain 236 404 IPR011990 GO:0005515
Gso2g0717 591 Gene3D Tetratricopeptide repeat domain 405 587 IPR011990 GO:0005515
Gso2g0717 591 Gene3D Tetratricopeptide repeat domain 4 122 IPR011990 GO:0005515
Gso2g0717 591 Coils Coil 490 510 - -
Gso2g0717 591 Pfam PPR repeat family 406 452 IPR002885 -
Gso2g0717 591 Pfam PPR repeat family 173 221 IPR002885 -
Gso2g0717 591 Pfam PPR repeat family 304 352 IPR002885 -
Gso2g0717 591 Pfam PPR repeat family 71 117 IPR002885 -
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 440 IPR002885 -
Gso2g0717 591 Pfam PPR repeat 248 275 IPR002885 -
Gso2g0717 591 Pfam PPR repeat 277 301 IPR002885 -
Gso2g0717 591 Pfam PPR repeat 480 504 IPR002885 -
Gso2g0717 591 Pfam PPR repeat 145 172 IPR002885 -
Gso2g0717 591 Pfam PPR repeat 379 404 IPR002885 -
Gso2g0717 591 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0717 Gso-Chr2 7487443 7490646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0717 10 589 Glycoside Hydrolase AT3G49170 29.713 9.79e-84 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0717 - - gmx:100819789 1191.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0789 1 28131775 28141881 Gso2g0717 2 7487443 7490646 GST