Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0690 ATGGCAGATCTTGGTAGCTACGGGAATGCCAACCGTGACATTGAACAACAAGCATTGATTGCTTTGAAAAAGGGTGCTCAACTTCTTAAATATGGTCGTAAAGGAAAGCCCAAGTTTTGTCCATTTAGACTTTCCAATGATGAATCATCCTTAATCTGGATTACAAGTAGTGGAGAAAGAAATCTGAAGCTATCTTCTGTCTCTAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACTTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTTATTTACAGTAATGGAAAGCGATCACTTGATTTGATTTGCAAAGATAAAGCTGAGGCTGAAGTGTGGATTGCTGGCCTCAAAGCACTGATATCTTCTGGTCAAGGTGGTCGTTCCAAAATTGATGGATGGAGTGATGGGGGTCTCATTCTTAATGATAGCAGAGACTTAACATCAAATAGTCCAAGTGAAAGTTCGGCTAGCACATCACGAGGCATTAGTTCTCCTGACATTTCTTCAACTCTTCCAAATACTTCACCAAAGTCCTATCGACCTGACAATACAATTTCTGAAAGGTCACATGCGTCACCAGACCCAACAAACATGCAAGTGAAAGGATCTGCTTCAGATGTATTTCGTGTCAGTGTTTCAAGTGCCCCTAGTACATCTAGTCATGGATCTGCACCTGATGACTATGATGCTCTGTGGGATGTATACATATGGGGAGAGGTTACCTGTGAAAATGTTAAAGTTGGTGCTGATAAAAATGTAAATTATTTCAGCCCGAGGGCAGATGTACTTCTCCCTAGACCACTGGAATCTAATGTAGTTTTAGATGTACATCATATAGCATGTGGTGTTAGACATGCTTCTCTAGTCACTAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGACGTCTTGGCCATGGTGTTGGGAAAAATGTGGTTCAACCTCGTCTAGTTGAAGCACTGATTTCTACAACTATTGATTTTGTTGCCTGTGGGGAGTTCCATTCCTGTGCTGTTACAATGGCTGGGGAGCTATATACATGGGGTGATGGTATGCATAATGCTGGGCTTCTTGGTCATGGCAGCAATGTCAGTCATTGGATACCAAAGAGAATTGCTGGTCCATTAGAGGGACTTCAAATTGCATTTGTTGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACAGGGCAGCTGTTTACGTTTGGTGATGGAACATTCGGTGTCTTGGGCCATGGAGATAGGCAAAATGTTTCATATCCAAGAGAAGTGGAATCCTTATTGGGGTTGAGGACAATAGCTGTTGCTTGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATCGCAACACACTCCGGTACAAGCATATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGACAAGGAGGCACGTCTTAAACCAACTTGTGTGTCTGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTGACAACATCTGGACGTGTTTTCACTATGGGAAGTACTGTTTATGGTCAGCTTGGGAGTTCTCTATCCGATGGAAAGGTTCCATGCTTGGTTGGAGACAAGATTGCCGGGGAATCTATTGAAGAAATTGCGTGTGGTGCATATCATGTAGCTGTATTAACATCCAAAAATGAAGTTTATACTTGGGGGAAAGGTGCAAATGGGAGATTGGGTCATGGAGATATTGAAGATCGTAAAACGCCAGCTTTGGTAGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCGAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGTGCCGAGCAGTCTCAGTGCTCTACTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAATTGTTATAACTGCGGACTTGTCCACTGCCATTCGTGCAGCTCGAGGAAAGCATTAAGAGCAGCACACGCCCCTAATCCTGGCAAGCCGTATCGTGTGTGTGATTCTTGTTATGCAAAATTGAACAAGGTTGCTGAAGCTTGCAATAGTAATAGAAGGAATGCCTTGCCTCGTCTGTCAGGTGAGAACAAGGATAGGCTAGACAAGTCTGACCTAAGATTGTCCAAGGCAGTAATTCCCTCTAACATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAGCAAGGAAAGAAAGGTGATACATTCTCACTGATTCGCCCCTCACAACCGCCTTCTCTGCTACAGCTGAAAGATGTTGTCTTGTCCACTGCTCTTGATCTGAGACGAACAGTTCCAAGACCAGTGGTTGCACCATCAGGAGTAAGTTCCAGATCTGTGTCCCCTTTCTCTAGAAGATCAAGCCCTCCTCGTTCAGCTACACCTATTCCAACAACTTCAGGACTTTCCTTCTCAAAAAGTATTTCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTGCATGCTCAGGTTGAGAGCCTGAGACAGAGATGTGAACTGCAAGAATTAGAGCTTCAAAGGTCAGCAAAAAAGACTCAAGAAGCTACAGCACTGGCTGCAGAGGAATCTGGTAAAAGTAAAGCTGCAAAAGAAGTTATTAAGTCACTCACAGCACAGCTCAAAGATCTGGCTGAGAAGCTTCCTCCTGGAGTTTATGATGCTGAGAACATTAGACCAGCTTACCTACCAAATGGTCTTGAGCCAAATGGGATCCACAATCCAGATTCAAATGGGGAGCAGCACTCCAGAGCAGAGTCAATCATTGGCTCTAGTTTGGATTCCATGGGACTTGAATCCGCTCTATTGAATAAAACTGCAGGGAACTCGCCAGGAACATATGGAACTAATCTTCACCAGAAAATTCGGAGCCCCGTGTCCTCTAATGGGACCAATAATTATCCAGGTGTTAAATTGCCAAATGGTGGTGGTGTAATTCAGGCAAGCAGCGGTACTGTGTCAGATACTGCTGATGGTAGGGATTCTGGGAATTTCCACGATGACGAGAGTGGTTTGAAATCGAGGAATGCTGCTCCGACTGCTGATGGTAATCAAGTTGAGGCAGAATGGATTGAACAGTATGAACCTGGTGTCTACATAACACTTGTGGCACTGCATGATGGAACAAGAGATCTGAAGCGAGTGCGCTTCAGCCGAAGGAGATTCGGAGAGCACCAAGCAGAAACCTGGTGGTCCGAGAACCGTGACAGGGTATATGAAAGATACAACGTTCGCAGCACGGACAAGTCTGCCAACCAAGCAGCACGTAGTTCCAAAGGTGCTGGTTCACCTGTTTCCCAAACTTAG 3363 0.4404 MADLGSYGNANRDIEQQALIALKKGAQLLKYGRKGKPKFCPFRLSNDESSLIWITSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYSNGKRSLDLICKDKAEAEVWIAGLKALISSGQGGRSKIDGWSDGGLILNDSRDLTSNSPSESSASTSRGISSPDISSTLPNTSPKSYRPDNTISERSHASPDPTNMQVKGSASDVFRVSVSSAPSTSSHGSAPDDYDALWDVYIWGEVTCENVKVGADKNVNYFSPRADVLLPRPLESNVVLDVHHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALISTTIDFVACGEFHSCAVTMAGELYTWGDGMHNAGLLGHGSNVSHWIPKRIAGPLEGLQIAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRQNVSYPREVESLLGLRTIAVACGVWHTAAVVEVIATHSGTSISSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGSSLSDGKVPCLVGDKIAGESIEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDIEDRKTPALVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSTCRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAAHAPNPGKPYRVCDSCYAKLNKVAEACNSNRRNALPRLSGENKDRLDKSDLRLSKAVIPSNMDLIKQLDSKAAKQGKKGDTFSLIRPSQPPSLLQLKDVVLSTALDLRRTVPRPVVAPSGVSSRSVSPFSRRSSPPRSATPIPTTSGLSFSKSISDSLKKTNELLNQEVQKLHAQVESLRQRCELQELELQRSAKKTQEATALAAEESGKSKAAKEVIKSLTAQLKDLAEKLPPGVYDAENIRPAYLPNGLEPNGIHNPDSNGEQHSRAESIIGSSLDSMGLESALLNKTAGNSPGTYGTNLHQKIRSPVSSNGTNNYPGVKLPNGGGVIQASSGTVSDTADGRDSGNFHDDESGLKSRNAAPTADGNQVEAEWIEQYEPGVYITLVALHDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSTDKSANQAARSSKGAGSPVSQT* 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 403 IPR000408 -
Gso2g0690 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1101 - -
Gso2g0690 1120 Pfam Transcription factor BRX N-terminal domain 874 909 IPR027988 -
Gso2g0690 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 390 400 IPR000408 -
Gso2g0690 1120 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1094 IPR013591 -
Gso2g0690 1120 SUPERFAMILY PH domain-like 16 124 - -
Gso2g0690 1120 SMART fyve_4 621 690 IPR000306 GO:0046872
Gso2g0690 1120 MobiDBLite consensus disorder prediction 1097 1120 - -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 349 400 IPR000408 -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 466 513 IPR000408 -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 404 452 IPR000408 -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 297 345 IPR000408 -
Gso2g0690 1120 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Gso2g0690 1120 Gene3D - 14 130 IPR011993 -
Gso2g0690 1120 ProSiteProfiles BRX domain profile. 1040 1095 IPR013591 -
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 404 455 IPR000408 -
Gso2g0690 1120 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 1101 - -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 963 988 - -
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Gso2g0690 1120 Gene3D - 458 628 IPR009091 -
Gso2g0690 1120 Gene3D - 187 457 IPR009091 -
Gso2g0690 1120 Coils Coil 823 864 - -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 299 315 IPR000408 -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 349 365 IPR000408 -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 406 420 IPR000408 -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Gso2g0690 1120 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 783 818 - -
Gso2g0690 1120 CDD PH_PLC_plant-like 12 125 - -
Gso2g0690 1120 SUPERFAMILY FYVE/PHD zinc finger 623 698 IPR011011 -
Gso2g0690 1120 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Gso2g0690 1120 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Gso2g0690 1120 MobiDBLite consensus disorder prediction 963 1034 - -
Gso2g0690 1120 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 442 452 IPR000408 -
Gso2g0690 1120 Coils Coil 879 899 - -
Gso2g0690 1120 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 690 IPR013083 -
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Gso2g0690 1120 SUPERFAMILY RCC1/BLIP-II 237 624 IPR009091 -
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 348 IPR000408 -
Gso2g0690 1120 CDD FYVE_like_SF 632 685 - -
Gso2g0690 1120 Pfam Pleckstrin homology domain 14 124 IPR001849 -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 148 205 - -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 917 936 - -
Gso2g0690 1120 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 997 1011 - -
Gso2g0690 1120 MobiDBLite consensus disorder prediction 788 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0690 Gso-Chr2 7236429 7245536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0690 1041 1109 Major Intrinsic Protein MIP AT1G31880 51.429 7.86e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0690 - - gmx:100805364 2173.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1369 16 33315993 33326414 Gso2g0690 2 7236429 7245536 GST
Gso2g0690 2 7236429 7245536 Gso20g1329 20 43352828 43361089 PCT
Gso2g0690 2 7236429 7245536 Gso10g2027 10 47281418 47289842 PCT
Gso20g1329 20 43352828 43361089 Gso2g0690 2 7236429 7245536 PCT
Gso10g2027 10 47281418 47289842 Gso2g0690 2 7236429 7245536 PCT