Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0689 ATGGCAAAGGTAAGGGATCAGAAGCTATACGTGACCGTTCCGAGTCTCTTTCGGTGTCCAATCTCCATGGACGTCATGCGCTCTCCCGTAAGCCTCTGCACCGGCGTCACATACGATCGCGCCAGCATTCAGCGCTGGCTCGACTCAGGCCACGACACGTGTCCCGCCACCTTGCAGGTTCTTCCCTCCAAAGACTTCATCCCCAATCTCACGCTCCACCGCCTCATCCGCCTCTGGCTCCTCTCCTCCTCCGCCGCCGAACCCTTCTCCCCCTCCTCCGCCGACCATCTCCGTCCTCTCCTCCGCAAAATCCATACCTCCGACGACGACCTCGCCGGAACCCTCTCCATAATCGCCGAATTCTCCCTAAAATCCGGTGAGAAACGCCGGTCTCTCGCCACCTTCCCCGGCTTCGACTCTGCCCTGGTCCGCGCGCTCGCCGGAAGCAATTCACTGATTGACGCTGCGGAAAACTCGATCTATCTTCTCGATTCGGTTTTCCGAGAAAACGGAGAGAAAATCCGGAAGCTGATTCTCGACGCTCGCGAAGAATGCTTTAGTTCGATGGTGTTTGTTCTGAGAAACGGATCTATGAAATCGAAGATTGAAACAGTTAGGATTTTGGAGTTTCTCTCGTGCGATTTTCAGTCTTCGAAATTGGTCGCGGAGACGCGAGGATTGTTGCCGTTGGTGGCGAGTTTTTTGAAAGACGGTGTAGAGGAGCTAAACGATGCCGTTTTGTCTCTGCTCGGCGTCGTTTCGGTGACTCACTCCGCGAAGATGGAACTCGTTAGTTCCGGAATCGTTGAAGTGGTTACGAAATTGCTGCGAGCGTGTTCGGCGGCGACGGCGGAGAGGTGTCTGAGGATGCTGGCTATTCTGGCCACGTGCGCGGAAGGGCGGGCGGCGATGGCGGTGGAGCCATCGCTTGCTGCGGCGGTGGTGGAGAGAATAACGAAGGCGCCCAAGGCTGCGGCGGCGGACGCGGTGGCGGTGCTGTGGAGCTTGTGCTGTTTGTGCGGGAACGTGAAGGTGCGAGATGACGTGGCAAAGCGCAACGGCGTCGTAGTGGTTTTGTTGGTCATGCAGAGGGGGTGGGAGGAGCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTTTGAAGGGTCCTGCGTGTAAGAACGGGTTGGGGTTGGAACTAGGATGCTATGACACCAAAACCACTCATATCAAACCTTGTTAA 1224 0.5637 MAKVRDQKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQRWLDSGHDTCPATLQVLPSKDFIPNLTLHRLIRLWLLSSSAAEPFSPSSADHLRPLLRKIHTSDDDLAGTLSIIAEFSLKSGEKRRSLATFPGFDSALVRALAGSNSLIDAAENSIYLLDSVFRENGEKIRKLILDAREECFSSMVFVLRNGSMKSKIETVRILEFLSCDFQSSKLVAETRGLLPLVASFLKDGVEELNDAVLSLLGVVSVTHSAKMELVSSGIVEVVTKLLRACSAATAERCLRMLAILATCAEGRAAMAVEPSLAAAVVERITKAPKAAAADAVAVLWSLCCLCGNVKVRDDVAKRNGVVVVLLVMQRGWEEHVRSMCVDLIKVLKGPACKNGLGLELGCYDTKTTHIKPC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0689 407 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 407 - -
Gso2g0689 407 CDD RING-Ubox_PUB 17 59 IPR045210 -
Gso2g0689 407 Pfam U-box domain 13 82 IPR003613 GO:0004842|GO:0016567
Gso2g0689 407 Gene3D - 85 387 IPR011989 -
Gso2g0689 407 PANTHER WDSAM1 PROTEIN 7 407 IPR045185 GO:0061630
Gso2g0689 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 84 IPR013083 -
Gso2g0689 407 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Gso2g0689 407 SUPERFAMILY ARM repeat 105 381 IPR016024 -
Gso2g0689 407 SUPERFAMILY RING/U-box 9 83 - -
Gso2g0689 407 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0689 Gso-Chr2 7217114 7218337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0689 4 406 U-box Gene Family AT5G09800 36.667 4.72e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0689 - - gmx:100811783 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1368 16 33294918 33296617 Gso2g0689 2 7217114 7218337 GST