Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0671 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGGGATGGGTTTGGAAGCTTATCAAGGAGGAGTTTTGATGTAAGGATTTCTGGTGGGGGCAAGTTGAATAGTTTGGTCCATGAGGCGCACGAACGCCAGCTAGTTATACAGAACAGCAGGTGGGCTAGCCTTCCGCCTGAGCTTCTTTGTGATGTTATTAAAAGATTGGAAGAAAGTGAGAGTACATGGCCTGCTCGTAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTACCAGTCCTGAGTTCTGTGGGAAGATTACTTTCCCTGTCTCCCTGAAGCAGCCTGGTTCAAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATCTGACATACCACCTATTCCTTTGTCTTAGTCCTGCATTGCTAGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGAACTACATGCACAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAATAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTTATAATTTATGATACACAGCCTCCCTATAACAATGCTCAGCTGTCTCCTCCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAAGTTTCTCCAAAGGTCCCTAGTGGCAGCTACAATATTGCCCAGATCACCTATGAGTTGAATGTCCTTGGTACTAGGGGCCCGCGCAGAATGAACTGCACCATGCACTCGATCCCTATGTCAGCCCTTGAGCCTGGTTGCACTGTCCCGGGCCAGCCAGAGCTCCTTCCCCGCTCCCTCGAAGATTCCTTCCGGAGCATATCCTTTGCTAGATCGATTGACAACTCAACCGAGTTCAGCAGCTCCAGGTTCTCGGACATATTTGTGGCGGGCAACGAAGAGGAGCAGGGAAAGGGTAGGCCTTTAGTTCTCAAGAACAAATCTCCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTGAACTTTAGAGGAAGGGTGACTGTTGCCTCCGTCAAGAATTTCCAGCTGATTGCTGCGACGCAGCCACCTGCAGCCGGTGCTCCTACACCGTCATCGCAGCCAGCGCAGTCTGATCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATATTTACTATGGACTATAGATATCCCCTATCTGCATTTCAGGCTTTTGCCATTTGCTTGACTAGTTTTGACACAAAACTAGCTTGTGAATAG 1275 0.4659 MSFRSIVRDVRDGFGSLSRRSFDVRISGGGKLNSLVHEAHERQLVIQNSRWASLPPELLCDVIKRLEESESTWPARKHVVACAAVCKSWREMCKEIVTSPEFCGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSNSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMHSIPMSALEPGCTVPGQPELLPRSLEDSFRSISFARSIDNSTEFSSSRFSDIFVAGNEEEQGKGRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPPAAGAPTPSSQPAQSDHDKIILQFGKVGKDIFTMDYRYPLSAFQAFAICLTSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0671 424 Pfam F-box domain 51 97 IPR001810 GO:0005515
Gso2g0671 424 Gene3D Tubby Protein; Chain A 110 418 IPR025659 -
Gso2g0671 424 Pfam Tub family 112 419 IPR000007 -
Gso2g0671 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Gso2g0671 424 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Gso2g0671 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Gso2g0671 424 SUPERFAMILY F-box domain 47 95 IPR036047 GO:0005515
Gso2g0671 424 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Gso2g0671 424 Gene3D - 46 98 - -
Gso2g0671 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 424 - -
Gso2g0671 424 PANTHER TUBBY-RELATED 1 424 - -
Gso2g0671 424 SUPERFAMILY Tubby C-terminal domain-like 100 424 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0671 Gso-Chr2 6980575 6985381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0671 1 424 TUB Transcription Factor Family AT1G76900 69.499 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso2g0671 Tub 6.6e-117 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0671 K19600 - gmx:100799499 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1339 16 32859999 32864886 Gso2g0671 2 6980575 6985381 GST
Gso2g0671 2 6980575 6985381 Gso20g1343 20 43561649 43565729 PCT
Gso2g0671 2 6980575 6985381 Gso10g2012 10 47085454 47089518 PCT
Gso20g1343 20 43561649 43565729 Gso2g0671 2 6980575 6985381 PCT
Gso10g2012 10 47085454 47089518 Gso2g0671 2 6980575 6985381 PCT