Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0660 ATGCTTAAATTTGGCACCTCTTTATTATATAACCGTTTCATTCTCAATAGCATCTCAAAGGGTGTCCTGAGAAGGAATCACACAAGAGAAATTTTGGGTGGATCTTGGCAATTTAAATTTGGTCCAAAAATAGTAAGAAAGAAAACCATAGTTTATATAGTTTTCATGTCCTTGCTAACGGTGGCGCACCAAAGGGGGTCAGGTGAGTTTATGCGGTTCACGGAAAGTCATGGCGGCGGTGGTGGCGGTGACGGCGATGGTGAATATGGTTATGGACATGATGATGGTAGAGGTGGTGGGGGTGGTGGTTCACTAGGGTTGAATTTTAACCAAGTGATGCAACAAGGTGAGGTTACAACGCAAGGAGGTACTTTGGTTTCAGGGTATAACAGGGGTGATCCAGATTTGAGAGAAATGGTTTCCGCTTTGACACATGTGGTGGTGTCTTCAGGGTCAGGCCAGAGGAGCACCGAATGGATCCAGCAAAGTGGTTTTCCTATGATGTCTGCATCTTCTCTTTCATGTTTGTCTTCTTTCTCTTCTCCTTCTTCTTCTGGAGCCTCTTGGGTTGGCCACAAAAGAGGCAGAGAAGAAGAAGAGAGTAGCTCTTCCCATAACATGATCCAACAACAACAACAAAGTGCTCCAAGACTCTTCAGAAACATTGGTGACTTCATGGTGCCTTCTCAAGGAGACTCATCTTCAGCGACAGAAGAAGCCCCCACCTCCACAACTACAAGTGTAACCGCTGTGGCAACAACGGTTACTGAAACCCCACCCCCACCGGGAGGTGGGGAAAGGAGGAGAAAGTACAGGGGAGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAAATTCGTGATCCACACAAAGCAGCAAGAGTTTGGCTTGGAACATTCGACACAGAAGAAGCAGCAGCAAGAGCATATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGAGCAAAGCTTAACTTCCCTGAAAATGTAAGAGCAGTTCCACCCATTCAACCTTTTCAAGCCACCACTAGGCTAACCGTTTCTGATTCCACCACCTCTCAATTCCGGCCACTCGTCACGGAGACGCCGCCCTTCATTCAGCAGCCACAGATTCAGGGCTCCTCTGACTTGATCAGAGATTACTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAACAAATACAACAACAATCACCTTCTAGTTTGCTTCAGCAGTTGTACTATAATGCACAATTGGCTTCACTTCAATCACCTTCAGTGCTATCATCATCTCCTTCATTTTCTTCTTCCGTGTCACCAACACCATTCCCATTGTTCTCAACCTCTGCTCAGTTTTCCTCTGCTTCTTTCCCCATGTTTTCAAGTCAACAAATGGGCTATTTCCAGCTGCCGGAAAGCTGCCCTCCCGCTGGCGGCGTGCCAGAGTTTCCGCCGTCCACATGGTCGGGTACCAGTGGCCAGCCACCACCTTCTGGTTGA 1488 0.4751 MLKFGTSLLYNRFILNSISKGVLRRNHTREILGGSWQFKFGPKIVRKKTIVYIVFMSLLTVAHQRGSGEFMRFTESHGGGGGGDGDGEYGYGHDDGRGGGGGGSLGLNFNQVMQQGEVTTQGGTLVSGYNRGDPDLREMVSALTHVVVSSGSGQRSTEWIQQSGFPMMSASSLSCLSSFSSPSSSGASWVGHKRGREEEESSSSHNMIQQQQQSAPRLFRNIGDFMVPSQGDSSSATEEAPTSTTTSVTAVATTVTETPPPPGGGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQATTRLTVSDSTTSQFRPLVTETPPFIQQPQIQGSSDLIRDYLQYSQLLQSDFQQQQIQQQSPSSLLQQLYYNAQLASLQSPSVLSSSPSFSSSVSPTPFPLFSTSAQFSSASFPMFSSQQMGYFQLPESCPPAGGVPEFPPSTWSGTSGQPPPSG* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0660 495 SMART rav1_2 270 333 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 MobiDBLite consensus disorder prediction 227 256 - -
Gso2g0660 495 MobiDBLite consensus disorder prediction 472 495 - -
Gso2g0660 495 CDD AP2 270 329 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 PRINTS Ethylene responsive element binding protein signature 271 282 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 PRINTS Ethylene responsive element binding protein signature 293 309 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 MobiDBLite consensus disorder prediction 481 495 - -
Gso2g0660 495 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Gso2g0660 495 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 137 460 - -
Gso2g0660 495 ProSiteProfiles AP2/ERF domain profile. 270 327 IPR001471 GO:0003700|GO:0006355
Gso2g0660 495 MobiDBLite consensus disorder prediction 182 214 - -
Gso2g0660 495 PANTHER DNA-BINDING DOMAIN 137 460 IPR044808 GO:0003700|GO:0009873
Gso2g0660 495 MobiDBLite consensus disorder prediction 226 275 - -
Gso2g0660 495 SUPERFAMILY DNA-binding domain 270 328 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0660 Gso-Chr2 6812491 6814731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0660 267 334 AP2-EREBP Transcription Factor Family AT2G33710 77.941 1.82e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0660 AP2 3.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0660 - - gmx:100804843 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1320 16 32598981 32601745 Gso2g0660 2 6812491 6814731 GST
Gso19g0897 19 35278165 35303093 Gso2g0660 2 6812491 6814731 PCT
Gso16g0393 16 4477208 4479422 Gso2g0660 2 6812491 6814731 PCT
Gso2g0660 2 6812491 6814731 Gso20g1356 20 43696062 43698335 PCT
Gso2g0660 2 6812491 6814731 Gso10g1998 10 46960478 46962268 PCT
Gso20g1356 20 43696062 43698335 Gso2g0660 2 6812491 6814731 PCT
Gso10g1998 10 46960478 46962268 Gso2g0660 2 6812491 6814731 PCT