LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g0643	ATGCTTCTTCTAAAAACCCCACTCTGTTATCTCAACCTAAACCTCCCAAACACCCCATCCATGGCGGGAGCAACAGGCAGAACCCTCTTCACCCTCTCCCTCTCTTCCTCCTCTTCCCTCACGCGCCTCTCTCTCATCCCCAAGCGCGTCCCACTCCCCAAACCCCTCCCCCTCTTCCGCCGCTTCCGCCCTCTCTGCTCCGTCTCCGCCGCCGCGCCGGAAGCTGCCGACGCGAAGCACTCAATACTCCTCGAGAGGCTCCGGTCCCGACACCTCCGTGACGCCGCGAAGGCCGCCCCCGAACCGAGGAAGAAGGAGAAGGTCGCCGCCGCAGCCGCAGCCGCCGCCGCCGCCGCCGAAGCGAAGGAGAAGAAGAAGGCGGTTGCGAGCTTCGAGGAGCTGGGACTGAGTGAGGAGGTCATGGGGGCTGTTAGGGAAATGGGAATTGAAGTTCCCACTGAGATACAGAGCATTGGCATCCCTGCCGTTTTGGAAGAGAAGAGCGTCGTTTTGGGGTCGCACACTGGCTCTGGCAAAACCCTCGCTTACTTGCTTCCCCTTGCTCAGTTGTTAAGACGGGACGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACGAGGGAGTTATCCGAGCAGGTTTTTCGAGTTGCAAAATCGATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATTGATGTGGTAGTTGGTACCCCTGGCAGGGTTCTTCAACATATTGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTTTTGGATGAGGCGGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGCAAATTTATAGGCCCATTAAAAAATCGTGCTTCAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTGCAAAATCTGATTGATGAGGAGTTTCTAGGCATTGTTCATCTGCGCACGTCAACATTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTTGCAGGTTCTGAGAACAAGCTTGAAGCATTACTTCAGGTACTAGAGCCAAGCCTAGCAAAAGGGAATAGGGTGATGGTTTTCTGCAATACATTGGATTCAAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTGCTGTGAACTACCATGGGGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTCAAGAGTGATGGTGATGATTGTCCTACATTGGTTTGCACGGACTTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCCTTGAATTCCATTGACTACCTTCATCGCACTGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGACGCATTAAGGAAGAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTCCGAAGGGACATTGCAAGGACCCAAAATCAAAGCACTGAGAAGGGAAAGAGCAAAAGATTGGTTAAAGTTTCAAAAGTTATGGGCAAATCTGGTAGTCGTTTTGGTTCTGGGAATAATGGATCAGGTATGAAATCTGGTAAAGGGTCACCAGTCAAATCTATGAAGAAAGGGATTCAAGTTTCAAAATCTGGAAAATCTTCTAGTGCAAATAGCTTAAGAAAAGCTTCTACAGAGAAGAGGCAATCAAGTAAAATGGTCAGTGCCACCAAATCTACGAATTCTAAACTCAATGTTGTGGGGTTTAGGGGGAAAAATTCGTCTTCAAATAATAAAGAATCGGGTTTGTGA	1911	0.4819	MLLLKTPLCYLNLNLPNTPSMAGATGRTLFTLSLSSSSSLTRLSLIPKRVPLPKPLPLFRRFRPLCSVSAAAPEAADAKHSILLERLRSRHLRDAAKAAPEPRKKEKVAAAAAAAAAAAEAKEKKKAVASFEELGLSEEVMGAVREMGIEVPTEIQSIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLAQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDVVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFIGPLKNRASKPDGLGFQTILVTATMTKAVQNLIDEEFLGIVHLRTSTLHKKISSARHDFIKLAGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISAVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEDALRKNESLEAITKESVRRDIARTQNQSTEKGKSKRLVKVSKVMGKSGSRFGSGNNGSGMKSGKGSPVKSMKKGIQVSKSGKSSSANSLRKASTEKRQSSKMVSATKSTNSKLNVVGFRGKNSSSNNKESGL*	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g0643	636	MobiDBLite	consensus disorder prediction	524	541	-	-
	Gso2g0643	636	Pfam	DEAD/DEAH box helicase	153	336	IPR011545	GO:0003676\|GO:0005524
	Gso2g0643	636	MobiDBLite	consensus disorder prediction	580	636	-	-
	Gso2g0643	636	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	47	552	-	-
	Gso2g0643	636	Gene3D	-	357	567	IPR027417	-
	Gso2g0643	636	SMART	ultradead3	148	357	IPR014001	-
	Gso2g0643	636	SMART	helicmild6	401	483	IPR001650	-
	Gso2g0643	636	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	160	347	IPR014001	-
	Gso2g0643	636	MobiDBLite	consensus disorder prediction	524	636	-	-
	Gso2g0643	636	Gene3D	-	93	344	IPR027417	-
	Gso2g0643	636	MobiDBLite	consensus disorder prediction	552	567	-	-
	Gso2g0643	636	CDD	SF2_C_DEAD	360	492	-	-
	Gso2g0643	636	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	372	525	IPR001650	-
	Gso2g0643	636	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	160	494	IPR027417	-
	Gso2g0643	636	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	129	157	IPR014014	GO:0003724
	Gso2g0643	636	CDD	DEADc	140	339	-	-
	Gso2g0643	636	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	47	552	-	-
	Gso2g0643	636	Pfam	Helicase conserved C-terminal domain	372	483	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g0643	Gso-Chr2	6648505	6656556	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g0643	96	504	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.361	1.15e-41	154

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso2g0643	-		-	gmx:100805709	1056.2