Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0642 ATGTTCGGTTCCGCACGAATCCTCTCCGACGTCACTCTCCGCCTCCGTCAAAACCTTTCGGTTCACGGTGTGCGCGTGCAGAACATAAACATCGGAGGCGGTGTGGGAGGCGAGATCCCGGACAACAAGCGTCTGGTGTACGCTCTTCAGAACCTCCACGGAATAGGCCGTTCCAAGGCGCAACACATCGTCGCCGAGCTCGGCGTCGAGAACAAATTCGTCAAGGACCTTAGCAAGAGAGAACTCTATTCCATTCGTGAATTGCTCTCCAAGTATCTCATCGGAAATGATTTGAAAAAGTGTGTTGAGAGAGATGTGGGAAGGTTGGTGGGCATTCAGTGCTACCGAGGGATTAGACATGTTGATAGCTTGCCATGCCGCGGACAGAGGACTCATACAAATGCACGCACCAGGAGGAGCCGGAAAACTTTCTCCGGATCCAGATAG 447 0.528 MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0642 148 MobiDBLite consensus disorder prediction 129 148 - -
Gso2g0642 148 Gene3D - 35 100 - -
Gso2g0642 148 ProSitePatterns Ribosomal protein S13 signature. 116 129 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso2g0642 148 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 4 143 - -
Gso2g0642 148 SUPERFAMILY S13-like H2TH domain 36 141 IPR010979 GO:0003676
Gso2g0642 148 MobiDBLite consensus disorder prediction 132 148 - -
Gso2g0642 148 Hamap 30S ribosomal protein S13 [rpsM]. 23 147 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso2g0642 148 Gene3D 30s ribosomal protein s13, domain 2 102 148 IPR027437 -
Gso2g0642 148 PANTHER SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL 4 143 - -
Gso2g0642 148 Pfam Ribosomal protein S13/S18 36 137 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Gso2g0642 148 ProSiteProfiles Ribosomal protein S13 family profile. 35 140 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0642 Gso-Chr2 6643814 6645479 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0642 22 136 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 27.338 9.21e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0642 K02952 - gmx:100527465 285.034