Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0640 ATGAGAAGAAGACTACGAGAGCTTCTTAGCCTCTGTTTTTCTCTAAAGCACAAACCTTTAGCAAAATCAGCACCACCACCCACTTCTTTCTTACAAAGTAGCATCACATTCTCAACCTCTTCCTCCTCCGCAACCCCTCCCATCGAAGAACCAAAGACTTCAACTTCGTCATCCAAGTCCCAAAGGGACTCGCTAATTTTCGAACAGTTCAAGCAAAGAAAACTCAAAGGGTCTCCAAAAGACTCAAAGGGTACCCCTCAAGTGTGTTCAACTTCAGTGCCACTAAGTTCTGATGCTGACACTGAAAAGGTGGTTCAAAAGGGTGTGCGGAATGAGAATGACCCCACCTTGGTGGTTAGAGGCTTCAAGGAGTTGGGGGTGAGTGAGGAGCTTGTTGAGGTGATGGAAGGGATTGGTGAGTTTGTTCCTACTGAGATACAGTGTGTGGCTATTCCTGCTGTTTTGGAAGGGAAGAGTGTGCTGTTGAGTTCACCATCTGAACCTGACAGAACCTTGGCCTTCTTGTTGCCACTTATTCAGCTGCTAAGACGGGATGGAGGGTTGCTTGGTTCGAATTCAAAGTATCCACAAGCCATCGTGCTTTGTGCTACAGAGGAGAAAAGTGAGCAGTGCTTTAATGCTGCAAAATATATCATCCATAATGCAGAATTGAAGTCTGCAAAGGATAGTGCTTCACCAGATAACGGGCAGTCAAAGGCCTCAATTGGCCTCATGATTGGGACTCCTAGTGAGATTCTTGAATACATTGAAGAGGGGAGTGTTGTTCCTGCTGAAATAAGATACTTGGTGTTGGATGAGGCCGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAGATCCATAAAATTCTGAGACCATTACAAGATCAAGAATCAAAATCTTGTGTTAAAAGATTACAAACTATTTTGGCAATTTCAACAATAGCTGAGGTTTTGGGTGAACAATCCTCCGTTGTAAAGCATCTTGAGTGCGATCATGCAGGAAATATTTCTGCAATGTCTCTAGAAATGGAACAAACAGAAGTATTTCATTTCACAGAGTCTCTTGACGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGATTCCCTTTTGAAACAACAGTGA 1122 0.4394 MRRRLRELLSLCFSLKHKPLAKSAPPPTSFLQSSITFSTSSSSATPPIEEPKTSTSSSKSQRDSLIFEQFKQRKLKGSPKDSKGTPQVCSTSVPLSSDADTEKVVQKGVRNENDPTLVVRGFKELGVSEELVEVMEGIGEFVPTEIQCVAIPAVLEGKSVLLSSPSEPDRTLAFLLPLIQLLRRDGGLLGSNSKYPQAIVLCATEEKSEQCFNAAKYIIHNAELKSAKDSASPDNGQSKASIGLMIGTPSEILEYIEEGSVVPAEIRYLVLDEADCMLGSGLGPEIHKILRPLQDQESKSCVKRLQTILAISTIAEVLGEQSSVVKHLECDHAGNISAMSLEMEQTEVFHFTESLDALRKKVAEAMDSLLKQQ* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0640 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 332 IPR014001 -
Gso2g0640 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 373 - -
Gso2g0640 373 SMART poly_2 310 372 IPR002004 GO:0003723
Gso2g0640 373 MobiDBLite consensus disorder prediction 19 108 - -
Gso2g0640 373 MobiDBLite consensus disorder prediction 83 99 - -
Gso2g0640 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 310 IPR027417 -
Gso2g0640 373 Pfam Poly-adenylate binding protein, unique domain 325 367 IPR002004 GO:0003723
Gso2g0640 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 373 - -
Gso2g0640 373 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Gso2g0640 373 MobiDBLite consensus disorder prediction 26 65 - -
Gso2g0640 373 Pfam DEAD/DEAH box helicase 144 309 IPR011545 GO:0003676|GO:0005524
Gso2g0640 373 Gene3D - 94 325 IPR027417 -
Gso2g0640 373 SUPERFAMILY PABC (PABP) domain 316 369 IPR036053 GO:0003723
Gso2g0640 373 SMART ultradead3 139 322 IPR014001 -
Gso2g0640 373 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 258 373 IPR002004 GO:0003723
Gso2g0640 373 MobiDBLite consensus disorder prediction 66 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0640 Gso-Chr2 6632072 6635295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0640 119 293 Eukaryotic Initiation Factors Gene Family AT3G19760 24.725 1.89e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0640 - - gmx:100800575 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1288 16 32258848 32261535 Gso2g0640 2 6632072 6635295 GST