Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0620 ATGGAAGATTCAGAGGAAGAAGAGCTTCTGAATCTTACTCTTTCAGTTGATGCCGGTAGGGAGAGGAGAATTAAGAAAGGAAGGACAAGGGATAATAATAATAACACTAATTCTGTTATTATTCCTATGAAGTCCAATGACGGGTATGAAGGGAAGATCTTCAGGCTCCTCCAAATGAGGGAGCTGATGCTAAGACAAGACCACAGAAGAAAAGGAGTGCTACTTGAAGATGTGAACAACAACAACAACAATGGCCTTCCTTTGATTCATTTGCTTCTCTCAACAGCCACTGCTGTTGATGATGATCAAAGAAACTATTGTGCCGCTCTTGAGAATCTCATTGACTTATACCAAACAGTTTCCCTAACAGGTGACTCGGTCCAACGTGTTGTGGCCTATTTCGCTGATGGTTTGGCTGCAAGGCTTCTCACAAAAAAGTCACCTTTCTATGACATGCTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACTGATCTCTATAGAGTCTCACCCTATTACCAATTTGCTCACTTCACAGCAAACCAGGCCATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAAGCACTTCATGTCATTGACTTTGATATTTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCACAAAAGGCAACAAGTGGCAAGAGAATTTTCCTCAGGATAACAGGTTTTGGGAACAACCTGAAAGAACTTCAAGAAACTGAGGCAAGGTTGGTTAGTTTCTCAAAGGGGTTTGGTAATCACCTTGTGTTTGAATTCCAAGGGATTTTAAGAGGTTCATCAAGGGCCTTCAACCTTAGGAAAAGGAAAAATGAAATTGTGGCAGTGAACCTTGTTTCTTATTTGAACACTTTGAGTAGTTTCATGAAGGTGTCTCACACATTGGGATTTGTTCATTCTCTTAGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCTGCAGGAGTCTCAAGACCTTCTTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTTGATTCACTGGATGATTGCTTGCCACTTGAGAGCACTGAGAGGTTGAGGATTGAGAAGCAGCTTTTGGGGAAAGAGATCAAGAGCATGCTTAACTATGACATGGATGATGGTGTGGAATATTATTGCCCCAAATATGAGAGGATGGAAACATGGAAAGGGAGAATGGAGAATCATGGGTTTGTTGGGAGAAAAATAAGCTCAAAGTGTGTGATCCAAGCAAAGCTGCTTCTGAAGATGAGGACACATTATTATCCACTACAGTTTGAGGAAGAGGGTGGTGGGGGATTCAGAGTTTCTGAAAGGGATGAAGGGAGAGTTATCTCTTTGGGGTGGCAAAATAGGTTTCTTCTCACTGTCTCAGCATGGCAACCAGTTTGA 1431 0.4242 MEDSEEEELLNLTLSVDAGRERRIKKGRTRDNNNNTNSVIIPMKSNDGYEGKIFRLLQMRELMLRQDHRRKGVLLEDVNNNNNNGLPLIHLLLSTATAVDDDQRNYCAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKALHVIDFDISYGFQWPSLIQSLSQKATSGKRIFLRITGFGNNLKELQETEARLVSFSKGFGNHLVFEFQGILRGSSRAFNLRKRKNEIVAVNLVSYLNTLSSFMKVSHTLGFVHSLSPSIVVLVKQEGSCRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKQLLGKEIKSMLNYDMDDGVEYYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGGGFRVSERDEGRVISLGWQNRFLLTVSAWQPV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0620 476 Pfam GRAS domain family 88 474 IPR005202 -
Gso2g0620 476 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 474 IPR005202 -
Gso2g0620 476 ProSiteProfiles GRAS family profile. 79 474 IPR005202 -
Gso2g0620 476 PANTHER OSJNBA0084A10.13 PROTEIN 8 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0620 Gso-Chr2 6429500 6431377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0620 80 474 GRAS Transcription Factor Family AT1G14920 34.314 2.13e-54 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso2g0620 GRAS 2.3e-87 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0620 - - gmx:100778791 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1261 16 31904484 31906400 Gso2g0620 2 6429500 6431377 GST
Gso2g0620 2 6429500 6431377 Gso20g1427 20 44467382 44469068 PCT
Gso2g0620 2 6429500 6431377 Gso10g1928 10 46251270 46252928 PCT
Gso20g1427 20 44467382 44469068 Gso2g0620 2 6429500 6431377 PCT
Gso10g1928 10 46251270 46252928 Gso2g0620 2 6429500 6431377 PCT