Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0613 ATGACAAGTGTTAACGTGCGCTCTCTCTTTCACGGTGGACACCCTGCTCCTTTCGTGGGTCCCCCGACATGGGCGCTACTACTAATAACGGATTTCGAAACCATTCACAGTCTCATAACTCATTCTTCAAACAAACAAAACCTTAAAAACAAAAAAATAAAAATAAAGCACACACTCTCATTCTTCTTCCCCTTCGTTTCTCATTCACACTTTTCATTTTCTCAGGAAAATAGAAAAAGAAAAAGAAAAATGATTGGAAACTTCATCGACGACATTGACTGCGGCAGCTTCTTCGACCACATCGACGACCTCCTCGAATTCCCCGACGACAACGCCGCGCCGGTCGCTCCTCCGGCGAACTTCTGGTCCGCCGAGTCCGACTCGCTCCCCGCCTCCTACACGGTGTTTTCCGACAACTCCGTGACGGACCTCTCGGCGGAGCTCTCTGTTTCGTATGACGACATAGTGCAATTAGAATGGCTGTCCAATTTTGTCGAGGACTCTTTCTCTGGTGGGAGCATCACCATGAAGAAAGAGGAGGAGCCACAATGCACCACCACCACCAAAGAGGACATAGCTCATGCCCAATTTCAGACAGCAAGCCCGGTCTCAGTCCTTGAAAGCAGCAGTTTCTGCTCCGGCGAGAAGGCTGCATCTCGCGGCCCGGAGATTTACATCCCCGTGCCATGTGGGCGTGTGCGCAGCAAGCGCCCACGCCCTGCAACCTTCAACCCCCATCCAGTGATGCAGCTAATCTCCCCTGCATCCTCCACTGGCGAGAACGTGCAGCACAACGCCACCACCACTTCCAAGGCGGCCTCATCAGATTCCGAGAATTTTGCCGAGTCAGTGATCAAGGGGCCAAAGCAGGCCTCTGGGGAGCACAAGAACAAAAGGAAGATCAAGGTGACTTTCTCATCAGGTCAAGAGCAGCAGAATGCACCATCACAGGCAGTTAGGAAATGCTTGCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGCCGGCTTTTCCCCGAATACCGCCCTGCAGCAAGCCCAACATTTTGCGCGGCCGTGCACTCCAACTCCCACAAGAAGGTTATTGAAATGAGAAACAAGACAGGCACCAAATCTGGCTTTGCAACTGATTCTGCTGCCTCACCAGAACTCATTCCAAACACTAACAACAGCCTTACCCTTGAATACATGTGA 1251 0.5172 MTSVNVRSLFHGGHPAPFVGPPTWALLLITDFETIHSLITHSSNKQNLKNKKIKIKHTLSFFFPFVSHSHFSFSQENRKRKRKMIGNFIDDIDCGSFFDHIDDLLEFPDDNAAPVAPPANFWSAESDSLPASYTVFSDNSVTDLSAELSVSYDDIVQLEWLSNFVEDSFSGGSITMKKEEEPQCTTTTKEDIAHAQFQTASPVSVLESSSFCSGEKAASRGPEIYIPVPCGRVRSKRPRPATFNPHPVMQLISPASSTGENVQHNATTTSKAASSDSENFAESVIKGPKQASGEHKNKRKIKVTFSSGQEQQNAPSQAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVIEMRNKTGTKSGFATDSAASPELIPNTNNSLTLEYM* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0613 416 ProSiteProfiles GATA-type zinc finger domain profile. 316 352 IPR000679 GO:0006355|GO:0043565
Gso2g0613 416 SMART GATA_3 316 366 IPR000679 GO:0006355|GO:0043565
Gso2g0613 416 Gene3D - 316 366 IPR013088 GO:0006355|GO:0008270
Gso2g0613 416 CDD ZnF_GATA 321 368 IPR000679 GO:0006355|GO:0043565
Gso2g0613 416 PANTHER GATA TRANSCRIPTION FACTOR 84 416 - -
Gso2g0613 416 MobiDBLite consensus disorder prediction 256 281 - -
Gso2g0613 416 Pfam GATA zinc finger 322 355 IPR000679 GO:0006355|GO:0043565
Gso2g0613 416 MobiDBLite consensus disorder prediction 256 298 - -
Gso2g0613 416 ProSitePatterns GATA-type zinc finger domain. 322 347 IPR000679 GO:0006355|GO:0043565
Gso2g0613 416 PANTHER GATA TRANSCRIPTION FACTOR 8 84 416 - -
Gso2g0613 416 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 320 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0613 Gso-Chr2 6358636 6364602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0613 101 386 C2C2-Gata Transcription Factor Family AT4G32890 35.762 1.35e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso2g0613 GATA 1.4e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0613 - - gmx:100792644 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1249 16 31788301 31794542 Gso2g0613 2 6358636 6364602 GST
Gso2g0613 2 6358636 6364602 Gso20g1459 20 44879141 44882569 PCT
Gso2g0613 2 6358636 6364602 Gso10g1891 10 45800692 45804350 PCT
Gso20g1459 20 44879141 44882569 Gso2g0613 2 6358636 6364602 PCT
Gso10g1891 10 45800692 45804350 Gso2g0613 2 6358636 6364602 PCT