Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0603 ATGGAAATTCAATTCCAGCATCCAAAGAAGCACTTGAGAGCAAGCACATCAAAAGGAGGCAAAGGGAGAAACAACAACAACAAAACCAAAAGCAAGTATGTTGGGGTGAGGCAAAGAGCATCAGGGAAATGGGTTGCTGAGATCAAAGACACAACACAAAAGATAAGAATGTGGCTTGGCACATATGAGACAGCAGAGGAAGCAGCAAGGGCTTATGATGAAGCTGCATGCCTCCTTCGTGGATCCAACACTCGCACCAACTTCATCACACGTGTGTCCCTTGATTCCCCTCTCGCTTCGCGGATTCAGAATCTTGTCAACAACAGAAAAGGTACCAAAACCAAACAAGAACAATATGTCGTGGAAACATGTGACACAAGGATCAAGAGCAACCGACATGAGTCGATCGCTCTACCAGAAGGAGCTAGTCCTCCACAACGTGGTGAACTAAGGTCTGAATCTTCGTTGGAAGACGTGTCCAAATTTAGTATCCAACAACTGTATATTGATCAGGATTGTCTCCGAAAGAAAATACGTGTGGGAAATGAGAAGAAAAGAAGGGTCAATAGCACCACTTGTAGTACTAGTAATAGTACTAATTCAAGCAATAATAGTGACTCATGTGAGAACTCACTTTCTAGTGAGACAACAACACAAAACACACAACAATTTGATGATGATGCTTATAGACCTGATTTGAGCAATTTCATGGTGTCCGAGTCAGGTTCTCATCAGAACAATCCTTCATGGGGTTTTGAACCTTCTTTTAGCCAAGTAATGGATGTAGCAAACCTGCCTGATATAGCTGGCTTGGAGCTTCCAGATTTTGAAAGGATAAAAGTTGAAAGGCAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGACACTCTTCAAGACTCTAACAATAATAATGGAGCTATCTGGGATTTCCCACCCTTTTGCTCTTTTTTGTGTTAA 972 0.4177 MEIQFQHPKKHLRASTSKGGKGRNNNNKTKSKYVGVRQRASGKWVAEIKDTTQKIRMWLGTYETAEEAARAYDEAACLLRGSNTRTNFITRVSLDSPLASRIQNLVNNRKGTKTKQEQYVVETCDTRIKSNRHESIALPEGASPPQRGELRSESSLEDVSKFSIQQLYIDQDCLRKKIRVGNEKKRRVNSTTCSTSNSTNSSNNSDSCENSLSSETTTQNTQQFDDDAYRPDLSNFMVSESGSHQNNPSWGFEPSFSQVMDVANLPDIAGLELPDFERIKVERQISASLYAINGVQEYMDTLQDSNNNNGAIWDFPPFCSFLC* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0603 323 MobiDBLite consensus disorder prediction 184 229 - -
Gso2g0603 323 MobiDBLite consensus disorder prediction 131 156 - -
Gso2g0603 323 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 Gene3D AP2/ERF domain 31 91 IPR036955 GO:0003700|GO:0006355
Gso2g0603 323 CDD AP2 31 88 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 11 307 - -
Gso2g0603 323 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Gso2g0603 323 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 MobiDBLite consensus disorder prediction 187 228 - -
Gso2g0603 323 MobiDBLite consensus disorder prediction 18 34 - -
Gso2g0603 323 MobiDBLite consensus disorder prediction 1 36 - -
Gso2g0603 323 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Gso2g0603 323 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 11 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0603 Gso-Chr2 6282204 6283679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0603 226 323 AP2-EREBP Transcription Factor Family AT5G19790 29.630 7.04e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0603 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0603 K09286 - gmx:100527497 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1238 16 31696623 31697958 Gso2g0603 2 6282204 6283679 GST
Gso19g0958 19 36718351 36719452 Gso2g0603 2 6282204 6283679 PCT
Gso16g0327 16 3705623 3706865 Gso2g0603 2 6282204 6283679 PCT
Gso2g0603 2 6282204 6283679 Gso19g0958 19 36718351 36719452 PCT
Gso2g0603 2 6282204 6283679 Gso16g0327 16 3705623 3706865 PCT