Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0593 ATGGATGTTTGCCGAAATGTATCAGTTTCTTCAAGTGAGTGTCAGCAAGAGCTTCCCACCCTTGATGACCTTTTCTCTCATCAGAACACGGAAGTGGATTTTGGCCTGGAATGGTTATCAGTGTTTGTGGAAGACTGTTTCTCTAGTAGGCCAAGCTGCCTCTTGGCACCTGGTGGTGTTCAAACCACAAGCACTAGCACAAGCACCAAGCCTTCTTCAGGCACTATATTGCAAAGACCCCAACAATTAAGTCATCACTGTCCTTTGCAGAATTTTGCTGTGCCAGGGAAAGCAAGGAGCAAGAGAAAGAGAAAGAGGCTTTCAGCCCCTAGAACAACAAAACACACCCTAAGCACATGGTCGCAACATTTCAGCACACAGAATGATGGGGTGAGTTCTGACCCTCCTCTTTTGAAACAAGCTTATTGGTTGGCTGATAGTGAACTCATTGTGCCTAAGAAGAAGGATGTTGAGCAAGAAGAGGAGGAGGGGGTTGTTGTGGTTGTGAAGAAGGAGAAATTGGGGGATTATTGTGATCATGATGAGGGTGATGAAATTAACAATAATAATAGTAATAATGATGATAATGTGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTTCAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGCCCTACTTTTGTAAGCTATTTGCATTCCAATTCACACAAGAAAGTCATGGAGATGAGAATGGGTGTTGTTGGTGTTTTTTCTACAGACAACAACAAGTAG 843 0.4508 MDVCRNVSVSSSECQQELPTLDDLFSHQNTEVDFGLEWLSVFVEDCFSSRPSCLLAPGGVQTTSTSTSTKPSSGTILQRPQQLSHHCPLQNFAVPGKARSKRKRKRLSAPRTTKHTLSTWSQHFSTQNDGVSSDPPLLKQAYWLADSELIVPKKKDVEQEEEEGVVVVVKKEKLGDYCDHDEGDEINNNNSNNDDNVQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRFKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMGVVGVFSTDNNK* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0593 280 MobiDBLite consensus disorder prediction 97 111 - -
Gso2g0593 280 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Gso2g0593 280 Pfam GATA zinc finger 205 239 IPR000679 GO:0006355|GO:0043565
Gso2g0593 280 Gene3D - 196 265 IPR013088 GO:0006355|GO:0008270
Gso2g0593 280 MobiDBLite consensus disorder prediction 95 117 - -
Gso2g0593 280 ProSiteProfiles GATA-type zinc finger domain profile. 203 235 IPR000679 GO:0006355|GO:0043565
Gso2g0593 280 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 274 - -
Gso2g0593 280 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Gso2g0593 280 PANTHER GATA TRANSCRIPTION FACTOR 1 274 - -
Gso2g0593 280 SMART GATA_3 199 253 IPR000679 GO:0006355|GO:0043565
Gso2g0593 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0593 Gso-Chr2 6185565 6187457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0593 36 267 C2C2-Gata Transcription Factor Family AT4G32890 40.506 2.30e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso2g0593 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0593 - - gmx:100783976 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1224 16 31568766 31570664 Gso2g0593 2 6185565 6187457 GST
Gso19g0937 19 36386221 36387655 Gso2g0593 2 6185565 6187457 PCT
Gso16g0346 16 3896815 3898223 Gso2g0593 2 6185565 6187457 PCT
Gso2g0593 2 6185565 6187457 Gso19g0937 19 36386221 36387655 PCT
Gso2g0593 2 6185565 6187457 Gso16g0346 16 3896815 3898223 PCT