Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0590 ATGGAGAATGATATAGAGGGTGTGCATTGGTGCAACATATGCTCTAAAATGGTGAATCCAATGAGTGATGATGAGAACATATGCCCGTTTTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGATGTTTTTGACTTAAGGTCAGCTTGGGTGTTCTCGCTTTACGCCCCAATTTTTCTCGGTTTGATGGGTGCTTTCAGCCCTTCCCTAGCAAGAATTGCTCCACATGGAGGCAGCAGCAGCTCAAGGGGTGTGGAAGAAGAGGTTGAGCAAGAGAGGGAAAATGAACTTGTGCTTGGGAGAAGGAGAAGAACTTCAACTTACATGATGCACCTCTTTCGCGGTCTTCACATTAGGATGGTGTCTGAACTTGAAAACCCTGAAGACAATAATAGGAACATGGATGGCAGCAGCATACTTGTGATTGATCCATTCAGTGAAGGTGCATTGATTGTGAGGGGACCTAACTTGAGCCACACAACTAGTTCGAATGAGAATAATGCTGTCGGAAGCTCCTTGAATGACCTTGTGGTAGGATCTGGCTTTGATTTGTTGCTACAGCATTTGGCACAGATTGGTCCTGGTGGCTATTCAAGTGTTAACCCTCCGGCACAGAAGGCGGCAATTGAGGCATTGCCTAGTGTGACTAGTGAGGAGAAGTTTCAGTGCCCAGTGTGCTTGGAGGATGTTGAGGTTGGGAGTGAAGCAAAGGAGATGCCATGTATGCACAAGTTCCATGGTGACTGCATTGTCTCATGGCTCAAGCTTCATGGCTCTTGTCCAGTTTGCAGGTTTCAGATGCCATCTGAGGATTCAACTCTTGAAGCCAATGTGGAGAATCGGAACAGTGAGCTGGTCAGAGCTGGAGAAGAGAGACCCAGAAATGGAAGGAGGAACTGGTTTCCAGTGCTGCAATCGTTTAACAATTTTCTTCCTTATCCTTGA 960 0.4625 MENDIEGVHWCNICSKMVNPMSDDENICPFCETEFSEVMDNLRDQNDVFDLRSAWVFSLYAPIFLGLMGAFSPSLARIAPHGGSSSSRGVEEEVEQERENELVLGRRRRTSTYMMHLFRGLHIRMVSELENPEDNNRNMDGSSILVIDPFSEGALIVRGPNLSHTTSSNENNAVGSSLNDLVVGSGFDLLLQHLAQIGPGGYSSVNPPAQKAAIEALPSVTSEEKFQCPVCLEDVEVGSEAKEMPCMHKFHGDCIVSWLKLHGSCPVCRFQMPSEDSTLEANVENRNSELVRAGEERPRNGRRNWFPVLQSFNNFLPYP* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0590 319 Pfam Ring finger domain 227 269 IPR001841 -
Gso2g0590 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 318 - -
Gso2g0590 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 275 IPR013083 -
Gso2g0590 319 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Gso2g0590 319 SUPERFAMILY RING/U-box 218 275 - -
Gso2g0590 319 SMART ring_2 228 268 IPR001841 -
Gso2g0590 319 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 2 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0590 Gso-Chr2 6158779 6160247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0590 90 292 C3H Transcription Factor Family AT1G26800 30.583 1.65e-23 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0590 K11982 - gmx:100787884 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1221 16 31540491 31542317 Gso2g0590 2 6158779 6160247 GST