Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0586 ATGATGGAAGAGCCGGTTGTGGTTAACAAAGGAGATGATCATGATCATGATCACGAGCCTTTGGATTTGCCTCCAGGTTTCAGGTTCCACCCCACAGATGAAGAGATCATCACTTGTTACCTCACAGAGAAAGTCCTCAATAGAACCTTCAGTGCAACTGCTATTGGAGAAGCTGATTTCAACAAGTGTGAGCCTTGGGACTTGCCCAAGAAAGCAAAGATGGGGGAGAAAGATTGGTACTTCTTTTGCCAAAGGGATAGGAAGTATCCAACAGGCATGAGAACCAATAGAGCAACCCAATCTGGGTATTGGAAGGCCACTGGCAAAGACAAAGAGATTTTCAAAGGGAAGAACAACCTTGTTGGGATGAAGAAGACCCTTGTTTTCTATAGAGGAAGAGCTCCTAAGGGTGAGAAGTCAAATTGGGTTATGCATGAATTCAGATTGGATGGCAAATTCGCATGTTACAACCTTCCCAAGGCTTCAAAGGATGAATGGGTTGTGTGCAAGGTTTTCCACAAGGGCAACACCACTACTACAGATGTTGTTAACAAAAGGGCACTCCCAATAATTAACCCTTGCCTTTTGAGAATGAACTCATCAATTGGAGAAGATCTATTTGATTTCTCTTCTCTCCCACCTCTCGTGGATCCTCTCTTTGACCAAACCTCAAACAAGCACATTGACAATGATTTCAAGGGTACTAATAACACGCCTTCATCTTCATCAGCTAAACCACCATCAAGTGGCTACTATCTTCCCAACTTCATCAACAACAACAACAATCAGCACATGCTAATGATGATGAAGCCAGAAGAACACAAAATGTATGAGATTCCCACCAACAACTATGCCTCCACCAGCCAAGTGAATTTCACTACTACTAATAACCCAATAATGGGAATTAGCACAGGCAATAACAATACCCTTCTTTCTCAGCCTCAAATTCGAACCCAAAATTCAACCTCAGTACCCTTCAACATGTTCCAAGATTATTATAATTATATGAACCAAGGAAAACAATGCAAGATGGAGCAATTCTCAAACACTAAGAACCAGCCTGTGGTCAGTGCCTCTCAAGACACGTGCCTCAGCAATGACACTTCCTCGGTGGTTTCTAAGCAAGACAACAACATAGGAAGGAACAAGGCATTGTACGAGGATAATTTTGAAGCTCCTTCATCAGTTGCTACTACCCTCTCAGATTTGGAATGCCTGTGGGATGATTACTGA 1233 0.4258 MMEEPVVVNKGDDHDHDHEPLDLPPGFRFHPTDEEIITCYLTEKVLNRTFSATAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDKEIFKGKNNLVGMKKTLVFYRGRAPKGEKSNWVMHEFRLDGKFACYNLPKASKDEWVVCKVFHKGNTTTTDVVNKRALPIINPCLLRMNSSIGEDLFDFSSLPPLVDPLFDQTSNKHIDNDFKGTNNTPSSSSAKPPSSGYYLPNFINNNNNQHMLMMMKPEEHKMYEIPTNNYASTSQVNFTTTNNPIMGISTGNNNTLLSQPQIRTQNSTSVPFNMFQDYYNYMNQGKQCKMEQFSNTKNQPVVSASQDTCLSNDTSSVVSKQDNNIGRNKALYEDNFEAPSSVATTLSDLECLWDDY* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0586 410 MobiDBLite consensus disorder prediction 1 24 - -
Gso2g0586 410 MobiDBLite consensus disorder prediction 1 25 - -
Gso2g0586 410 Pfam No apical meristem (NAM) protein 24 149 IPR003441 GO:0003677|GO:0006355
Gso2g0586 410 MobiDBLite consensus disorder prediction 227 249 - -
Gso2g0586 410 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 362 - -
Gso2g0586 410 SUPERFAMILY NAC domain 20 174 IPR036093 GO:0003677|GO:0006355
Gso2g0586 410 Gene3D NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Gso2g0586 410 ProSiteProfiles NAC domain profile. 23 174 IPR003441 GO:0003677|GO:0006355
Gso2g0586 410 PANTHER NAC DOMAIN-CONTAINING PROTEIN 87 16 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0586 Gso-Chr2 6122543 6124801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0586 1 220 NAC Transcription Factor Family AT5G18270 71.493 1.86e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso2g0586 NAM 7.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0586 - - gmx:100813376 828.935