Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0580 ATGGGAACCCCACAATCCAATAACTTGCCACCAGGTTTTAGGTTCCACCCTACAGATGAAGAGCTCATTCTTCACTACCTAAGGAAGAAGGTTGCCTCTATTCCTTTGCCAGTTTCCATCATAGCTGAGGTTGATATCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCCGAGTTTGGGGAGAAAGAGTGGTACTTCTTCAGTCCTAGAGACCGGAAGTACCCAAATGGAGCAAGGCCAAACAGGGCAGCAGCTTCAGGGTATTGGAAGGCCACAGGCACTGATAAGAACATAGTGGCATCACTGCCAGGAGGAGGGGTTAGAGAGCACTTTGGTGTGAAGAAGGCTTTGGTGTTCTACAAAGGAAGACCCCCAAAGGGTGTCAAGACCAATTGGATCATGCATGAATATCGCTTTGTTGACACCAATAGACCCATTAGGATCAAAGACACCTCCATGAGGTTGGATGACTGGGTTCTATGCCGGATATACAAGAAGACCAAACATGCTGTATCTCCAACCACAGAGGCAGCATCATCAACACTGCAAGTGATCAATGAGCAATTAGATCAAGCAGAAGAAGAGGAGCAAATCAAAGACAACCTTTTACCAATTTTGAAGAACAACACTACTCTTGTCCCTCCTCAACAAACCACACTGCTCATGTCTCAGAAATCTTTATCCTTTTCCAACCTCTTGGATGCCACAGATTACTCCATGCTCAGCACCATCTTATCTGAGAATAACCACTCCAATAATTACCTTACTCCAAGTGAAGCCTTATTCAATAATTGTGAGAATCTGGATCAGGAAATTACCCCCCAAAATTACTACTACAACAACAACACCAATAGCTACTTGTTTCAGAAGAACCCTTCCCACATGGAAAACATGGCTAGGCCAAAACGCCACCTTTCAAACATGGATCATGAGGACAACATGATATTATACCCTTCAAAGAAATATCAAAGTTCCTCTTGCAATTTTCCTAACTCTAATCCACAATGGAACTTCATGTTCAAGCAGCCACTCATGAGTCCTCAATATCTTCCATTTCAGTGA 1065 0.4366 MGTPQSNNLPPGFRFHPTDEELILHYLRKKVASIPLPVSIIAEVDIYKFDPWELPAKAEFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKNIVASLPGGGVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRFVDTNRPIRIKDTSMRLDDWVLCRIYKKTKHAVSPTTEAASSTLQVINEQLDQAEEEEQIKDNLLPILKNNTTLVPPQQTTLLMSQKSLSFSNLLDATDYSMLSTILSENNHSNNYLTPSEALFNNCENLDQEITPQNYYYNNNTNSYLFQKNPSHMENMARPKRHLSNMDHEDNMILYPSKKYQSSSCNFPNSNPQWNFMFKQPLMSPQYLPFQ* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0580 354 PANTHER OS01G0104200 PROTEIN 5 311 - -
Gso2g0580 354 PANTHER NAC TRANSCRIPTION FACTOR 56 5 311 - -
Gso2g0580 354 Coils Coil 176 203 - -
Gso2g0580 354 ProSiteProfiles NAC domain profile. 9 167 IPR003441 GO:0003677|GO:0006355
Gso2g0580 354 SUPERFAMILY NAC domain 6 167 IPR036093 GO:0003677|GO:0006355
Gso2g0580 354 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Gso2g0580 354 Gene3D NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0580 Gso-Chr2 6063596 6066338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0580 7 248 NAC Transcription Factor Family AT3G04070 60.569 6.00e-98 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso2g0580 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0580 - - gmx:100806421 714.531