Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0577 ATGAACGATCTTATGACGAAATCCTTCACCAGCTACGTGGAGCTGAAGAAGGTCGCAATGAAAGAAGACGTTGATTTGGAAGCCGGTGGTCCTGGTGATCGCAAGGTGGAACTGAGCTCTTCCACGACCCACTTGGACACAGACATGGGCCTCTTCCTAGAAGAGGCCGAGAAGGTGAAGGCCGAGATGGGGTCCCTCCGAGACATCCTGGGCCGGCTCCAGCAGGCCAACGAGGAGAGCAAGTCCCTCCACAAGCCTGAAGCCCACAAGGCCCTCAGAAGCCGAATCAACGCTGAAATCCTTGCCGTACTCAAGAAGGCCCGGGCCATCCGGACCCAGCTGGAGGAGATGGACCGCGCCAATGCCGCCAACAGGCGCCTCTCCGCCCTCAAGGACGGGACCCCCGCCATCTACCGGACCCGGATTGCTGTCACCAATGGCCTCAGGAAGAAGCTGAAGGAGCTCATGATGGACTTTCAGGATCTGAGGCAGAGGATGATGACTGAGTACAAGGATACTGTGTGTAGAAGGTACTTCACAGTTACTGGGGAGCACCCAGATGAGGATGTGATTGAGAAGATCATCGCCAACGGGAACGAGGAAGAGGTTCTTGCTAAGGCCATAGAGGAACACGGGAGAGGGAAGGTTCTGGATACCGTGCTGGAAATTCAGGACAGGCATGATGCTGCCAAGGAGGTTGAGAAGAGTCTGCTTGAGCTGCACCAGGTGTTTCTTGACATGGCTGTCATGGTGGAGGCACAGGGTGAGAAGATGGACGACATCGAGCATCACGTCTTCCACGCTTCCCACTATGTCAAGGATGGAACCAAGAGTCTCCAGAGTGCAAAGGAGTACCAGAAGAGGAGCAGGAAGTGGATGTGCATTGGGATCATTCTTCTGCTCATTCTTATTCTGGTTATTGTTATTCCTATTGTCACCAGTTTAAGCAGTTCTTGA 957 0.5392 MNDLMTKSFTSYVELKKVAMKEDVDLEAGGPGDRKVELSSSTTHLDTDMGLFLEEAEKVKAEMGSLRDILGRLQQANEESKSLHKPEAHKALRSRINAEILAVLKKARAIRTQLEEMDRANAANRRLSALKDGTPAIYRTRIAVTNGLRKKLKELMMDFQDLRQRMMTEYKDTVCRRYFTVTGEHPDEDVIEKIIANGNEEEVLAKAIEEHGRGKVLDTVLEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVFHASHYVKDGTKSLQSAKEYQKRSRKWMCIGIILLLILILVIVIPIVTSLSSS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0577 318 SMART SynN_4 44 171 IPR006011 GO:0016020
Gso2g0577 318 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 5 311 - -
Gso2g0577 318 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 220 282 IPR000727 -
Gso2g0577 318 SUPERFAMILY t-snare proteins 47 275 IPR010989 GO:0016020|GO:0016192
Gso2g0577 318 Pfam Syntaxin 52 255 IPR006011 GO:0016020
Gso2g0577 318 Gene3D - 217 315 - -
Gso2g0577 318 Gene3D - 45 174 - -
Gso2g0577 318 PANTHER SYNTAXIN 5 311 IPR045242 -
Gso2g0577 318 SMART tSNARE_6 215 282 IPR000727 -
Gso2g0577 318 CDD SynN 49 207 IPR006011 GO:0016020
Gso2g0577 318 Pfam SNARE domain 257 308 IPR000727 -
Gso2g0577 318 Coils Coil 145 165 - -
Gso2g0577 318 ProSitePatterns Syntaxin / epimorphin family signature. 226 265 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso2g0577 318 CDD SNARE_syntaxin1-like 219 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0577 Gso-Chr2 6037988 6039268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0577 1 318 SNARE and Associated Proteins AT1G08560 63.438 2.40e-129 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0577 K08486 - gmx:100799493 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0577 2 6037988 6039268 Gso20g1472 20 45028948 45035516 PCT
Gso2g0577 2 6037988 6039268 Gso10g1877 10 45647559 45654775 PCT