Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0567 ATGACCGATTCTGACGCCAATCACAATGACCCATCTCTCGCTACCGATACCGATGCACCCAATGATGCTGAAGATGAGGTCAAGTTGAGGTCTAGGGACCAAAGACTGGCTCTGCCAGGTGAGCCCAAGTGTATTATATGCGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAGTGCAAACAAGCACTGCTTTGCAGGATTGCCAAATCGTCGTCTCCACCACCTAAAAGGATTCCTGCAGCTGATGAGTGCTTTTATGTTAAAGATGCTGATTACGAATCGGGGACTGCATCTATGGCTAGTGATCTTAGAAAGAAACTTGACATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTCTGCCTGTAACCTCCCTGACAAGCTTCTTCACAATATAGAAGCAGCAGGATATGAAATGCCTACACCTGTCCAGATGCAAGCAATCCCAGCTGCTTTGACGGGAAAAAGCATGCTCCTTTTGGCCGATACAGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCAATAGTTTCTCGTTGTGCGATTCATCGTCGACAATATGTTTCAGATAAGAAGAATCCTTTAGCTTTGGTGTTAACTCCTACCAGAGAGCTCTGTATGCAGGTTGAAGAGCATGCTAAGTTGCTTGGAAAGGGTATGCCTTTCAAAACCGCTCTTGTGGTTGGCGGTGATGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCAGGAAGGCTTGTTGATCTTTTAACGAAGCATGAGATTGACTTAGATGATGTGATGACTTTCGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGCTTTAGAGATCAGGTCATGCAGATATATAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCTACAATGTCTAATGATTTAGAGAAGATGATTAACACTCTGGCGAAAGGTACGGTGGTTATCTCTGTTGGAGAACCTAATACACCGAATAAGGCTGTGAAGCAGCTAGCTATTTGGGTAGAGTCAAAGGAAAAGAAGCAGAAGCTGTTTGAAATTTTGGAAAGTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTTGGCTCCAGACTTGGGGCAGATCTCCTGGCTAATGCAATTACAGTTTCCACAGGAATTAAAGCAGTTTCCATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAACAATGCAGTCCCTTTTGGTGGGGGAGGTCCCCGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGGGTTGATCTGCTTGGTGTAAGGCAGGTGATTGTATTTGACATGCCTAATAACATTAAGGAGTATGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAGGAAGGTCAAGGCATAGTTTTTGTGAATGAGGAGAATAAGAATATATTTTCAGAATTAATTGAAGTTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTATGCCACAGGAGTTTTCTCTGGTGGCAAGGGTTCAAAGAAGAGAAAGCATACAGGATGA 1587 0.4486 MTDSDANHNDPSLATDTDAPNDAEDEVKLRSRDQRLALPGEPKCIICGRYGEYICDETDDDVCSLECKQALLCRIAKSSSPPPKRIPAADECFYVKDADYESGTASMASDLRKKLDIHVKGDVVAPVLSFSACNLPDKLLHNIEAAGYEMPTPVQMQAIPAALTGKSMLLLADTGSGKSASFLIPIVSRCAIHRRQYVSDKKNPLALVLTPTRELCMQVEEHAKLLGKGMPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLTKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYSATMSNDLEKMINTLAKGTVVISVGEPNTPNKAVKQLAIWVESKEKKQKLFEILESKKHFKPPVVVYVGSRLGADLLANAITVSTGIKAVSIHGEKSMKERRETMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNNIKEYVHQIGRASRMGEEGQGIVFVNEENKNIFSELIEVLKSGGAAVPRELANSRYATGVFSGGKGSKKRKHTG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0567 528 CDD SF2_C_DEAD 347 479 - -
Gso2g0567 528 Gene3D - 23 80 - -
Gso2g0567 528 SMART helicmild6 388 470 IPR001650 -
Gso2g0567 528 Gene3D - 341 526 IPR027417 -
Gso2g0567 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Gso2g0567 528 MobiDBLite consensus disorder prediction 1 16 - -
Gso2g0567 528 PANTHER ATP-DEPENDENT RNA HELICASE DDX59-RELATED 23 512 - -
Gso2g0567 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 335 IPR014001 -
Gso2g0567 528 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 23 512 - -
Gso2g0567 528 Pfam Helicase conserved C-terminal domain 359 470 IPR001650 -
Gso2g0567 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 337 IPR027417 -
Gso2g0567 528 Gene3D - 94 339 IPR027417 -
Gso2g0567 528 MobiDBLite consensus disorder prediction 1 32 - -
Gso2g0567 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 509 IPR001650 -
Gso2g0567 528 SMART ultradead3 147 350 IPR014001 -
Gso2g0567 528 Pfam HIT zinc finger 42 68 IPR007529 -
Gso2g0567 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 484 IPR027417 -
Gso2g0567 528 Pfam DEAD/DEAH box helicase 152 323 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0567 Gso-Chr2 5922255 5925326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0567 129 490 Eukaryotic Initiation Factors Gene Family AT1G72730 32.153 4.18e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0567 K19466 - gmx:100781473 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1203 16 31275464 31278703 Gso2g0567 2 5922255 5925326 GST