Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0563 ATGAAACCCTACACATCATCACCATCGTCCTCCAGGTCCAAAAAGAAGCAAACAACAACACAACAAGATCATGAAACAGCATGGGGAGGAAGGTACCTTGGGGTGAGGAGGAGGCCATGGGGAAGGTATGCAGCTGAAATCCGTGACCCTTCCACCAAGGAAAGACATTGGTTAGGCACGTTTGATACCGCAGAAGAGGCCGCCCTAGCATACGATAGGGCGGCCCGCTCCATGCGGGGCTCACGTGCTCGAACCAACTTTGTCTATCCGGACACTCCTCCGGGTTCCTCCGTCACCTCCATCCTTTCTCCGGACGAGCAAACCCAAACCCAAATCCACCAGGCCCAAGAAGAGCTCTCCTCTCTATTCAATCCGAACCCGTTTGCACAACCCGACCCAAACCCGCATTTTTCCTTATGCGGGTATTCGGGTGTCACGAACACTCCTACATTTTCTGCCACCGAAGAAATTGCCCCATCCGGTGGCTATAGCTATAATTATGGATACACTGAAGGAGGACCCAGCATGGAGAGTTCACATTTTAAGCTCTTTGACGATGGTGAAACGGAGCTTCCACCATTGCCACCGGATATCACAAGCTCCATGGGCTATGAAATGGGTAATGGGTTTTATGGAAACGATGCCGGGTTTTCGGATCCAAGTTTCGGCGCTAATGCTACCGGGTCAGGTTACCCATATTCGGGATTTGGATCCGGTGATTACGTGGTGCATAGTCCACTCTTTGGCGCAATGCCACCAGTGTCAGATAATGTTTCAACGGGCCGTGAGGGTTTTGATTTGGCAAGCTCTTCTTTTTTCTTCTGA 825 0.5103 MKPYTSSPSSSRSKKKQTTTQQDHETAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSRARTNFVYPDTPPGSSVTSILSPDEQTQTQIHQAQEELSSLFNPNPFAQPDPNPHFSLCGYSGVTNTPTFSATEEIAPSGGYSYNYGYTEGGPSMESSHFKLFDDGETELPPLPPDITSSMGYEMGNGFYGNDAGFSDPSFGANATGSGYPYSGFGSGDYVVHSPLFGAMPPVSDNVSTGREGFDLASSSFFF* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0563 274 Pfam AP2 domain 32 80 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR LEP 9 274 - -
Gso2g0563 274 MobiDBLite consensus disorder prediction 1 31 - -
Gso2g0563 274 MobiDBLite consensus disorder prediction 1 26 - -
Gso2g0563 274 CDD AP2 31 87 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Gso2g0563 274 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 274 - -
Gso2g0563 274 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Gso2g0563 274 SUPERFAMILY DNA-binding domain 31 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0563 Gso-Chr2 5883438 5884650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0563 9 265 AP2-EREBP Transcription Factor Family AT5G13910 45.914 5.00e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso2g0563 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0563 K09286 - gmx:100815668 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1195 16 31200099 31201265 Gso2g0563 2 5883438 5884650 GST
Gso16g0381 16 4331731 4332438 Gso2g0563 2 5883438 5884650 PCT
Gso2g0563 2 5883438 5884650 Gso16g0381 16 4331731 4332438 PCT