Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0549 ATGAGTAACAACAAAAACAACACCTTCTTCCCCACCCCACATGGCCAAATAAGCACTTCTGAATTTGTTAATAGCCAAAATCCGCCCCAGGCTACAAATCAAGGCATTGATGATATTAGGAAAAAGCACTATAGAGGAGTTAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATAAGAGACCCTAAGAAAGCAGCTAGAGTGTGGCTTGGCACCTTTGACACGGCAGAGGCTGCAGCTATGGCTTATGATGCTGCTGCATTGAGGTTCAAAGGAAACAAAGCCAAACTCAATTTTCCTGAACGTGTTGTTATGCCAATACCACCACAAACAAATAACAATAATTCCACTTCTTCATCAGCTCCTACTACACAATCATCTTCTTCTCTTCCACCACCACAATCTCTACATAATAATAGTTCTCTTTCAGCAGAAGGGTTTCCAAATCTTGAGGAGTATGCAAGGTTGCTGAGTTGTAGCGATGATGATGATTTTCAACGTGTTGCATTGGGGCTCTACCAGCATCACAATAATGAGGATTTTATTTGTGGTTCATCACAACCACCACCAGTGCCGTTTTTTGTGTCCTCTTCTTCTTCTTCTTCTGCAATGACATCGTCATATTCTGATTTTTTGGGCCAAGGAGGGAGTACTGGTTTTGATGAAGGGAACAAGAGGGGGTCGTAG 687 0.4309 MSNNKNNTFFPTPHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDAAALRFKGNKAKLNFPERVVMPIPPQTNNNNSTSSSAPTTQSSSSLPPPQSLHNNSSLSAEGFPNLEEYARLLSCSDDDDFQRVALGLYQHHNNEDFICGSSQPPPVPFFVSSSSSSSAMTSSYSDFLGQGGSTGFDEGNKRGS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0549 228 MobiDBLite consensus disorder prediction 1 35 - -
Gso2g0549 228 MobiDBLite consensus disorder prediction 196 214 - -
Gso2g0549 228 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 14 225 - -
Gso2g0549 228 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 MobiDBLite consensus disorder prediction 196 228 - -
Gso2g0549 228 PANTHER DNA-BINDING DOMAIN 14 225 IPR044808 GO:0003700|GO:0009873
Gso2g0549 228 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Gso2g0549 228 CDD AP2 42 101 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Gso2g0549 228 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Gso2g0549 228 MobiDBLite consensus disorder prediction 107 144 - -
Gso2g0549 228 MobiDBLite consensus disorder prediction 1 34 - -
Gso2g0549 228 MobiDBLite consensus disorder prediction 104 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0549 Gso-Chr2 5786674 5788826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0549 24 105 AP2-EREBP Transcription Factor Family AT5G61890 75.610 2.39e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso2g0549 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0549 - - gmx:100796480 371.703