Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0505 ATGGAAGTACTTCCTTGTTCTGGTGTTCAGTATGCTGGGGGATCTGATTGCTCTCAGCCAAGTTTAGGAACAACTTTTGTAAACCAGGGAGAAAGTGGTGATCAGGCTAAATTGGAAGATGATCAACTGAATGACTCATTACGAACGGAAGGGCCTCAGCTAGAAAGACAAGGCCAAACGCAACAGATTGTTTGTGAACCCTTGACTAATATAGCTTGCCAATGTGGTGGATCTTCATGTTGTGACTGCCAAGTGGAAGGCCAGAAGGAATCCATTAGTTTCCATGATGTTGAAGATGATGGAATAAACAAGCCTTGCTTAGCCTTTGAAAACTCTGGCTCTATTCCAGATACAAATGAAAGTGAATCACCAAATGGTAGTAGGGAAGTAGAGCTGTCATTTTCTGAACCCACCTGGCTGAAGGGAGATGAGCCTGTGGCATTGTGGGTCAAGTGGAGAGGGAACTGGCAGGCTGGTATCAAATGTGCAAGGGCTGACTGGCCATTATCAACTTTAAAAGCAAAACCAACTCATGACCGGAAGAAATATTTTGTTATATTTTTTCCTCACACAAGGAATCATTCTTGGGCTGATATGCTGCTTGTTCGATCAATTTATGAGTTTCCCCAGCCTATTGCACACAAAACTCATCAAGCAGGATTGAAAATGGTAAAAGATTTGACTGTTGCACGGCGGTTTATAATGCAAAAGCTAACCATTGGTATACTGAGCATTGTTGATCAGCTTCATCCTAATGCCTTGCTAGAAACTGCTCGTGATGTGATGGTTTGGAAGGAGTTTGCTATGGAGACTTCTCGTTGTAACAGTTATTCAGATTTTGGCAGAATGCTTCTAAAGTTACTAAATAGCATAGTGAAGCACTACACAGATGCTGACTGGATACAACATTCATCTTACTCTTGGGCTGAACGATGCCAGACTGCAAATAGTGCTGAATTGGTAGAGCTACTGAAGGAGGAATTGTCTGATTCTATTTTGTGGAATGATGTCAATGCTCTTTGGGATGCACTGGTGCAATCAACATTAGGTTCTGAGTGGAAAACCTGGAAGCATGATGTGATGAAATGGTTTTCCACATCACCTTCCTTTTCTAGCAGCAAGGATATGAATCAAATGACCTCTGATGGGTTGTTCCAAGTAAGCCTTCAGGTTGGTAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACGCATGCTACACTGGTGGAAACAAAAGGTTCATATCAGCAAATTACTCTTGAAACTGACCCAGGTTTCTATAGGAGTCAGGACATATTGAATACATTAGCAGCTGAGACCTCTACACACAAAGATATTAAGGAGGTACCTGTGGCAACTAGTAATTTGACCAATAAATGGAATGAAATTGTAGTTGAGGCTACTGATTCTGAGATGTTGCATGGAAATGGAATGGAGCCAACACCTATGAATGAGATGGCTGGTAAAAAAATTGTAGAACCTGGTGCTAAGAATCGGCAATGCATAGCTTATGTTGAAGCGAAGGGAAGACAATGTGTGAGATGGGCAAATGACGGTGAGGTATATTGTTGTGCGCATTTGTCATCTCATTTTTTGGGAAGCTTAGGGAAAGCCGAAAAACCTGTTTCAGTTGATACTCCAATGTGTGGAGGTACAACTGTTCTTGGTACTAAGTGTAAGCATCATGCCCTTCCTGGCTCTTCATTCTGTAAGAAACATCGTCCCCATGCTGAAACAAATGAGATCTCAAATTTAACCCATAATACACTGAAGAGAAAACATGAAGAAAATCACATTGGTTCAGGGGGCTTGATCAGCAAAGACATGGTATTGATAAATGCTGAAAGTTCATTGCAAGTAGAACCAGTGCCTGCCATTGATGGTGATTCCTTCCTTGGAAGAAGCAACTTAGATGAGAGGCCTGCCCTTTCTGGCAATGATCAGATTGCAATGGAGGTACTTCACTGTATAGGTTCTCCTCCTTATGATGACAAGGACCCCTGTTTGGAAGAACCAAAGAGGTATTTCTTGTATTGTGAGAAGCACCTTCCAAGCTGGCTAAAACGTGCAAGAAATGGAAAGAGTAGGATAATATCAAAAGAAGTGTTCACAGAAATTTTAAGGGACTGCTGCTCATGGAAGCAAAAGGTGCACCTGCATAAAGCATGTGAGCTTTTTTACAGGCTATTCAAAAGCATTTTGTCACAAAGAAGCCCAGCTTCTAAGGAAGTTCAGTTCAAGCAGGCTTTAACTGAAGCCTCAAAAGATACTAGTGTTGGGGAATTCCTTATGAAGTTGGTTCATAGTGAAAAGGAGAGAATTGAATTGATCTGGGGATTCAATGATGACATAGATGTATCCTCACTCGTGGAAGGTCCACCTCTCGTTCCTTCCACAGATAATGACAGCTTTGATAATGAAAATGTCATTAAGTGTAAGATTTGCTGTGCAAAATTTCCTGATGACCAAACTCTTGGTAACCATTGGATGGACAACCATAAAAAGGAAGCACAGTGGCTGTTCAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTTACAAACAAGAAGCTATTGGAAGCCCATGTTCAGGAGAGACACCGTGTGCAATTTGTTGAACAGTGCTTGCTTCTCCAATGCATTCCTTGTGGTAGTCATTTTGGAAATATGGAGCAGTTATGGCTGCATGTTCTATCAGTCCACCCTGTTGAATTCAAGCCACTGAAAGCTCCTGAGCAGCAAACTTTGCCTTGTGAGGACTCTCCGGAAAATCTTGACCAGGGAAATTCAGCTTCTTTGGAGAATAATTCTGAGAATCCAGGTGGTTTGCGGAGGTTTGTTTGCCGGTTTTGTGGGTTAAAATTTGATTTACTACCTGACCTGGGTCGCCATCATCAAGCTGCTCATATGGGCCGCAATTTAGGTACCAGCCGCTCTACAAAAAGGGGAGTTCGTTATTATACGCATAGATTAAAATCTGGCAGACTTAGCCGTCCTAGATTTAAAAATGGTTTGGCAGCAGCATCATTTAGAATTAGGAATAGGGCTAATGCTAATTTAAAGAGACACATTCAGGCAACAAAGTCACTTGACATGGTGGAAAGAAAGATAAAACCTCATGTAACTGAGACAGGAAATATTGGTAAGTTGGCAGAATATCAATGCTCGGCAGTTGCAAAGATTTTATTTTCTGAGATTCAGAAGACTAAACCACGGCCTAACAATCTTGATATCTTGTCAATTGGTCGTTCTGTATGCTGTAAAGTTAGTCTTAAAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTGAAAGGCTCTATTTGAAGGCAGCAAAACTTTGCAGCGATCATAACATTCAGGTGGGTTGGCACCAGGATGGGTTCATTTGTCTTAGGGGTTGTAAGGTTTTGAAGGACCAAAGGGATCTCTCTCCCTTAGCATCTCTTCCTAATGGTTTCCTAAAGCCAAAATCAGTAATTTTATCAGATCCTGTTTGTGACGAGTTGGAGGTGGATGAGTTTCATTACATCATTGATTCACAACATTTAAAAGTAGGGTCCTTACAAAAGGTTACTGTCTTGTGTGATGACATAAGCTTTGGGAAGGAATCAATTCCAGTGATTTGTGTAGTAGATCAAGATATTCTAAACTCTCTTCTTAGGCATGGGTCCGTTGAGGAAGATATAAATCTCTCTAGGCCTTGGGAGAGCTTTACTTATGTTACAAAGCCAATGCTTGATCAATCACTTAGCCTTGATACTGAGAGTCTGCAACTAAGATGTGCTTGCTCATTTTCTGCCTGCTGTCCTGAAACGTGTGATCATGTCTACCTTTTTGATAATGACTATGATGATGCAAAAGACATATTTGGGAAACCAATGCGTAGTAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTGTATGAATGTAACCAGATGTGCAAATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATACGGATTAAATTGGAAGTCTTTAAAACAGAAAAGAAGGGATGGGCTGTAAGGGCTGGTGAGGCTATCCTTCGTGGAACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGATAAGCAGGAGGCACAAAACCGGCGCAAAAGATACGGCAAAGAACACTGCAGTTATTTCTATGACGTTGATGATCATGTTAATGATATGGGTAGATTGATTGAAGGACAGGCCCATTATGTCATTGATACAACTAGATTTGGAAATGTCTCTAGGTTCATCAATAACAGCTGCTCGCCCAATCTTGTGAGTTACCAAGTTCTTGTAGAGAGCATGGATTGTGAGCGTGCACATATTGGTCTTTACGCAAATCGAGATATTGCTTTGGGAGAAGAATTGACATATAATTATCATTATGATCTTTTACCTGGAGAGGGATCTCCTTGCCTTTGTGGTTCCGCCAAGTGCTGGGGACGTCTGTACTAG 4485 0.4134 MEVLPCSGVQYAGGSDCSQPSLGTTFVNQGESGDQAKLEDDQLNDSLRTEGPQLERQGQTQQIVCEPLTNIACQCGGSSCCDCQVEGQKESISFHDVEDDGINKPCLAFENSGSIPDTNESESPNGSREVELSFSEPTWLKGDEPVALWVKWRGNWQAGIKCARADWPLSTLKAKPTHDRKKYFVIFFPHTRNHSWADMLLVRSIYEFPQPIAHKTHQAGLKMVKDLTVARRFIMQKLTIGILSIVDQLHPNALLETARDVMVWKEFAMETSRCNSYSDFGRMLLKLLNSIVKHYTDADWIQHSSYSWAERCQTANSAELVELLKEELSDSILWNDVNALWDALVQSTLGSEWKTWKHDVMKWFSTSPSFSSSKDMNQMTSDGLFQVSLQVGRKRPKLEVRRADTHATLVETKGSYQQITLETDPGFYRSQDILNTLAAETSTHKDIKEVPVATSNLTNKWNEIVVEATDSEMLHGNGMEPTPMNEMAGKKIVEPGAKNRQCIAYVEAKGRQCVRWANDGEVYCCAHLSSHFLGSLGKAEKPVSVDTPMCGGTTVLGTKCKHHALPGSSFCKKHRPHAETNEISNLTHNTLKRKHEENHIGSGGLISKDMVLINAESSLQVEPVPAIDGDSFLGRSNLDERPALSGNDQIAMEVLHCIGSPPYDDKDPCLEEPKRYFLYCEKHLPSWLKRARNGKSRIISKEVFTEILRDCCSWKQKVHLHKACELFYRLFKSILSQRSPASKEVQFKQALTEASKDTSVGEFLMKLVHSEKERIELIWGFNDDIDVSSLVEGPPLVPSTDNDSFDNENVIKCKICCAKFPDDQTLGNHWMDNHKKEAQWLFRGYACAICLDSFTNKKLLEAHVQERHRVQFVEQCLLLQCIPCGSHFGNMEQLWLHVLSVHPVEFKPLKAPEQQTLPCEDSPENLDQGNSASLENNSENPGGLRRFVCRFCGLKFDLLPDLGRHHQAAHMGRNLGTSRSTKRGVRYYTHRLKSGRLSRPRFKNGLAAASFRIRNRANANLKRHIQATKSLDMVERKIKPHVTETGNIGKLAEYQCSAVAKILFSEIQKTKPRPNNLDILSIGRSVCCKVSLKASLEEKYGILPERLYLKAAKLCSDHNIQVGWHQDGFICLRGCKVLKDQRDLSPLASLPNGFLKPKSVILSDPVCDELEVDEFHYIIDSQHLKVGSLQKVTVLCDDISFGKESIPVICVVDQDILNSLLRHGSVEEDINLSRPWESFTYVTKPMLDQSLSLDTESLQLRCACSFSACCPETCDHVYLFDNDYDDAKDIFGKPMRSRFPYDENGRIILEEGYLVYECNQMCKCNKTCPNRILQNGIRIKLEVFKTEKKGWAVRAGEAILRGTFVCEYIGEVLDKQEAQNRRKRYGKEHCSYFYDVDDHVNDMGRLIEGQAHYVIDTTRFGNVSRFINNSCSPNLVSYQVLVESMDCERAHIGLYANRDIALGEELTYNYHYDLLPGEGSPCLCGSAKCWGRLY* 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0505 1494 ProSiteProfiles SET domain profile. 1339 1471 IPR001214 GO:0005515
Gso2g0505 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 847 868 IPR013087 -
Gso2g0505 1494 Gene3D SET domain 1188 1494 IPR046341 -
Gso2g0505 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 813 834 IPR013087 -
Gso2g0505 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 881 902 IPR013087 -
Gso2g0505 1494 Gene3D Classic Zinc Finger 798 871 - -
Gso2g0505 1494 ProSitePatterns Zinc finger C2H2 type domain signature. 949 970 IPR013087 -
Gso2g0505 1494 Pfam SET domain 1350 1470 IPR001214 GO:0005515
Gso2g0505 1494 Pfam Zinc finger C2H2-type, 3 repeats 847 971 IPR040689 -
Gso2g0505 1494 ProSiteProfiles Pre-SET domain profile. 1260 1336 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso2g0505 1494 ProSiteProfiles Post-SET domain profile. 1478 1494 IPR003616 -
Gso2g0505 1494 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1494 - -
Gso2g0505 1494 SUPERFAMILY SET domain 1186 1484 IPR046341 -
Gso2g0505 1494 SMART preset_2 1196 1323 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gso2g0505 1494 ProSiteProfiles Zinc finger C2H2 type domain profile. 845 868 IPR013087 -
Gso2g0505 1494 SMART set_7 1339 1477 IPR001214 GO:0005515
Gso2g0505 1494 MobiDBLite consensus disorder prediction 918 939 - -
Gso2g0505 1494 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1494 - -
Gso2g0505 1494 ProSiteProfiles Zinc finger C2H2 type domain profile. 947 975 IPR013087 -
Gso2g0505 1494 SMART c2h2final6 845 868 IPR013087 -
Gso2g0505 1494 SMART c2h2final6 811 834 IPR013087 -
Gso2g0505 1494 SMART c2h2final6 947 970 IPR013087 -
Gso2g0505 1494 SMART c2h2final6 879 902 IPR013087 -
Gso2g0505 1494 MobiDBLite consensus disorder prediction 112 132 - -
Gso2g0505 1494 MobiDBLite consensus disorder prediction 913 939 - -
Gso2g0505 1494 Pfam Pre-SET motif 1200 1331 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0505 Gso-Chr2 5389173 5404765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0505 129 1493 C2H2 Transcription Factor Family AT2G23740 50.289 0.0 1329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso2g0505 Pre-SET 1.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0505 - - gmx:100808203 3065.79