Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0502 ATGGGTTGGTTTACTAAGTTGCTTAAGGGATCCAACCGTAAATCCTCAGGAGGAAGATATCATGGGAAATATGAAGATGGCAGAATATCGGACAATCTTGATTGTTCAGCGGATGATTTGACGGATATTGAGAAAGAAGAAATTGGTCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATAAGAAAGGGAAAAAAGTTATTGAGGACGACTCTGAATCTGAAGATGATGAACTGTGTCCACTTAGCGACGAGGAAGCTGAATCTGTTGGTGAAGTTCAGCAAGATGAAGATGACCATCATGCTAAAATTCAACAGGATGAAGACAAACATCTTGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGAGACTGATTCTTTATTTCAACCTTTTGCACACTTATTTCCACCTGTATACAGAATCTGTGCTGGCTGTAATGCTGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGGTTATTGGCATCCAGAATGCTTTTGTTGCCATGCTTGCAAACTTCCAATCACTGATTATGAGATTCCACCAAATTCAGCTGGTCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCGCATGAGCGTGATGGTACTCCTCGCTGTTGTAGCTGTCAAAGATTGGAGTCAGTGGATACCAAATATCTGTTGCTTGACGATGGTCGAAAGCTGTGCCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTCGAAATACAAGAGTTTTATGAGGGTTTACATATGAAGATAGAGCAGCAAGTTCCGATGCTTTTGGTTGAGAGACAAGCACTGAACGAGGCTATGGAGGGAGAGAAGAATGGTCATCATCACTTACCTGAAACCAGAGGACTTTGCTTGTCCGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGAGCAGGATACCAGCTCATAGATATGATAACCGAGCCTTTTAGGCTGGTCCGTCGTTGTGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCTAGGTTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCATGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGAATCAGAGATTATTCCTGGCACTGGGGATGAAGGTGCATCATCATCATCATCATCATCATCCTCATCGCCTTCGTCTTCTTCATCATCAAAGAAGGGTAAACGTTCCGACTTTGAGAAGAAACTAGGTAAGTACTTCAAACACCAGATTGAGTCAGATAGCTCAGCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCTGTGGCTAAGTATGGACTTAGAAGAACCCTTGACCATATCCGATTGACAGGAAGTTTTCCATATTGA 1497 0.4302 MGWFTKLLKGSNRKSSGGRYHGKYEDGRISDNLDCSADDLTDIEKEEIGRAIALSLSEADKKGKKVIEDDSESEDDELCPLSDEEAESVGEVQQDEDDHHAKIQQDEDKHLDEVQLEEDEQLARAIQESLSISSPPRSETDSLFQPFAHLFPPVYRICAGCNAEIGHGRFLSCMGGYWHPECFCCHACKLPITDYEIPPNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRLESVDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLVRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLESEIIPGTGDEGASSSSSSSSSSPSSSSSSKKGKRSDFEKKLGKYFKHQIESDSSAAYGDGFREGNQAVAKYGLRRTLDHIRLTGSFPY* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0502 498 ProSiteProfiles LIM domain profile. 156 239 IPR001781 -
Gso2g0502 498 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Gso2g0502 498 MobiDBLite consensus disorder prediction 70 92 - -
Gso2g0502 498 PANTHER PROTEIN DA1-RELATED 2 197 498 IPR045218 -
Gso2g0502 498 PANTHER PROTEIN DA1-RELATED 2 1 196 IPR045218 -
Gso2g0502 498 Pfam LIM domain 158 194 IPR001781 -
Gso2g0502 498 CDD LIM_DA1 158 200 - -
Gso2g0502 498 Gene3D Cysteine Rich Protein 155 226 - -
Gso2g0502 498 MobiDBLite consensus disorder prediction 1 28 - -
Gso2g0502 498 MobiDBLite consensus disorder prediction 59 102 - -
Gso2g0502 498 MobiDBLite consensus disorder prediction 417 446 - -
Gso2g0502 498 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Gso2g0502 498 SMART lim_4 157 221 IPR001781 -
Gso2g0502 498 SMART uim 43 62 IPR003903 -
Gso2g0502 498 SMART uim 117 136 IPR003903 -
Gso2g0502 498 MobiDBLite consensus disorder prediction 418 440 - -
Gso2g0502 498 Pfam Protein DA1 279 493 IPR022087 -
Gso2g0502 498 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Gso2g0502 498 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 197 498 - -
Gso2g0502 498 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0502 Gso-Chr2 5301557 5307911 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso2g0502 DA1-like 1.6e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0502 - - gmx:100806605 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0502 2 5301557 5307911 Gso16g1144 16 30409024 30415333 GST
Gso1g1544 1 52097677 52105394 Gso2g0502 2 5301557 5307911 PCT
Gso11g0531 11 4765654 4772170 Gso2g0502 2 5301557 5307911 PCT
Gso2g0502 2 5301557 5307911 Gso1g1544 1 52097677 52105394 PCT
Gso2g0502 2 5301557 5307911 Gso11g0531 11 4765654 4772170 PCT