Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0500 ATGAATCTCTTTCCTATGATCACAACAACAATCTTCACTTTGATTATGTTATGTAGCATGTCAGTGGTGGTTCATGTTCAGGGAAAGCAACCTTACGTTGGTTTGGCCACAACAGCATGTGGCCAAACGGGAAATTCAAACTCTATGCGTGGCTACACTTGCAATGGCGTGAATCCTAGTTGCCAAGCTTACCTCACCTTCAGGGCTCAACCCCTTTACAACACTGTTCCCTCAATATCTGCTTTGTTGGGTTCAGACTCATCTCAACTTTCTGTGGCAAATTCTGTTTCTGAGGATGGAACCTTTGAAACAAACAAGTTAGTGATTGTTCCAATCAATTGCTCTTGTTCAGGTAACAACAACAACCAGTATTATCAGTTCAACACATCCTACGAGGTTGAAAGAGGGGACTCGTATTTTGTGATCGCTAACAACACTTTTGAAGGCCTTTCAACATGTCAAGCATTGCAGGACCAAAACAACATTCCCGAAGGAGACTTAATGCCGGGAAATGAACTCATTGTTCCTCTTCGATGCGCTTGTCCCTCGAAGAATCAAACTGAGCAAGGTGTCAAGTACTTGTTGAGTTACCTTGTGGCTTCTAATGACATTGTTTGGCTCATTGGTGAAAGATTTGGTGTCAGCAGTGAGACAATTGTTGAAGCTAATACTCTTTCTTCTCAACAACCAATAATTCATCCTTTTACCACACTTCTTGTACCTCTTCAAGACGAGCCCTCGAGTAATCAAACTTCTGAGCCATCTCCACCACCATCAACACCTCCACCTCCGCCTCTATCTTCTTCTAGTGGAAGATCAAGCAAAACATGGGTGTATGCAGTGGTAGGAGTTGTTGGAGCTATTGCATTAATATCATCAGTCCTTTGTGCCATCGTTTTCAGGACGCGTTATCTCAAGGGTGGTAATAAAAGGAAAGATGATTCTTTGATTGTGTCTGATAGTTTTGTGGCTGTGGCTATTGAGAAACCACAAGAGAAGAAGTTGGAAGAAGAAGAATCTGAAAATTTGGCAGAGATCATATCTGGCATAAGTGAATCATTTAAGGTGTACAGATATGAGGAACTGCAAAGTGCAACGAATGGTTTTAGTCCTAGCTGCTGCATCAAAGGGTCGGTTTATCGCGGTTTCATCAATGGGGATTTGGCTGCAATAAAAAAGATAGATGGTGATGTGTCAAAGGAGATAGAGCTTTTGAGCAAAGTGAACCATTCAAATGTTATACGTCTTTCTGGGGTTTGTTTTAACGGGGGCTATTGGTATCTTGTTTATGAGTATGCTGCTAACGGATACTTGAGTGATTGGATCAACATCAAGGGAAAGTTTCTGAGTTGGACACAAAGAATTCAAATTGCATTGGATGTTGCTACAGGACTTGACTATCTTCATAGTTTCACTTCTCCTCCTCATGTACACAAGGATCTGAAGAGTGGTAACATTCTTCTGGATAGTGATTTCAGGGCAAAGATTTCAAACTTTAGGCTTGCAAGGTCAGTGGAAAGAGAGGGTAGTGAGGGTGATCAATATGTGATGACAAGGCATATTGTTGGGACAAGAGGATACATGGCTCCAGAGTATTTGGAAAATGGTCTTGTGTCTACAAAGCTTGATGTCTACGCATTTGGGGTTTTAATGTTGGAAATGCTCACTGGAAAAGATGTTGCTGATGTTTATGCAGAAGGAAATATTGCGAATTTGTTTGATGTTTTAAGCGCGGTGCTTGACGAGGAAGGTGAACATTTGAGATTGAGTGAGTTCATGGATCCCTCTTTGAAAGGAAATTATCCAATGGAACTTGCTGTGTTTGTGGCTAGAATGATAGAAACTTGCATAAAGAAAGATCCAGCAAGTCGACCTGACATGCACGAGATTGTGTCATCTTTGTCCAAAGCCTTGGATTCTTCATTGAGATGGGAAACGTCTATGGAAAGGAAGTTTTGA 1959 0.414 MNLFPMITTTIFTLIMLCSMSVVVHVQGKQPYVGLATTACGQTGNSNSMRGYTCNGVNPSCQAYLTFRAQPLYNTVPSISALLGSDSSQLSVANSVSEDGTFETNKLVIVPINCSCSGNNNNQYYQFNTSYEVERGDSYFVIANNTFEGLSTCQALQDQNNIPEGDLMPGNELIVPLRCACPSKNQTEQGVKYLLSYLVASNDIVWLIGERFGVSSETIVEANTLSSQQPIIHPFTTLLVPLQDEPSSNQTSEPSPPPSTPPPPPLSSSSGRSSKTWVYAVVGVVGAIALISSVLCAIVFRTRYLKGGNKRKDDSLIVSDSFVAVAIEKPQEKKLEEEESENLAEIISGISESFKVYRYEELQSATNGFSPSCCIKGSVYRGFINGDLAAIKKIDGDVSKEIELLSKVNHSNVIRLSGVCFNGGYWYLVYEYAANGYLSDWINIKGKFLSWTQRIQIALDVATGLDYLHSFTSPPHVHKDLKSGNILLDSDFRAKISNFRLARSVEREGSEGDQYVMTRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVLMLEMLTGKDVADVYAEGNIANLFDVLSAVLDEEGEHLRLSEFMDPSLKGNYPMELAVFVARMIETCIKKDPASRPDMHEIVSSLSKALDSSLRWETSMERKF* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0500 652 SMART serkin_6 359 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0500 652 ProSiteProfiles Protein kinase domain profile. 311 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0500 652 Gene3D LysM domain 185 256 IPR036779 -
Gso2g0500 652 CDD LysM 196 240 IPR018392 -
Gso2g0500 652 SMART LysM_2 130 176 IPR018392 -
Gso2g0500 652 SMART LysM_2 196 241 IPR018392 -
Gso2g0500 652 MobiDBLite consensus disorder prediction 251 268 - -
Gso2g0500 652 SUPERFAMILY Protein kinase-like (PK-like) 351 634 IPR011009 -
Gso2g0500 652 Pfam Protein kinase domain 390 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0500 652 Pfam LysM domain 197 241 IPR018392 -
Gso2g0500 652 Pfam LysM domain 131 176 IPR018392 -
Gso2g0500 652 Gene3D Transferase(Phosphotransferase) domain 1 434 650 - -
Gso2g0500 652 MobiDBLite consensus disorder prediction 243 272 - -
Gso2g0500 652 ProSiteProfiles LysM domain profile. 195 240 IPR018392 -
Gso2g0500 652 Gene3D LysM domain 126 184 IPR036779 -
Gso2g0500 652 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 10 649 - -
Gso2g0500 652 Gene3D Phosphorylase Kinase; domain 1 337 432 - -
Gso2g0500 652 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0500 Gso-Chr2 5290276 5292470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0500 12 647 Receptor kinase-like Gene Family AT2G23770 45.398 5.81e-177 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Gso2g0500 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0500 - - gmx:100806077 1198.34