Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0492 ATGAATCATCAACTTATCGAAGACCATATGATGCTCTTCCCTTGGCTATGCCCTGGTGGTGCATTCACTGAAGTAACTCCTCAACAAGGGGAAAATAATAAGCCAAGGCACAAGCGAAATAGAAAGAATAGAGGAGGAGAAAATGGCACCATCATCACCAAGAAGAGAAAGCTCACCGTAGAGCAAATTAGTCTTCTTGAGCGAAATTTCAGCAATGAACATAAACTTGAGTCTGAAAGGAAGGACCAGCTCGCATTGGAGCTTAGTTTGGACCCTCGACAAGTTGCGGTGTGGTTTCAAAATAGACGTTCTCGTTGGAAGACTCAAAAATTGGAGGAAGAGTACTCCAATCTTAAGAATGTTCATGAAACCACTATGCTCGACAAATGTCATCTTGAGAATGAGGTGTTGAAGCTCAAGGAGCAGCTTTTGGAAACAAAGAAGGAGATTGAGCAGCTACTAGAGCGTGGTGAAAAAGCCCCAAGCAACAACTCCAGTTCCTCACAGTCAATGGAAGAAGCTGTGAACCCACCATTTCTTGGAGAGTTTAGGGTGGAAGAATATGATGATGGTGATGTGTTCTACATTCCAGAGACTCATCACATCAATGGGATGGAATGGATTAATCTGTACAATTGA 639 0.4272 MNHQLIEDHMMLFPWLCPGGAFTEVTPQQGENNKPRHKRNRKNRGGENGTIITKKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQLLETKKEIEQLLERGEKAPSNNSSSSQSMEEAVNPPFLGEFRVEEYDDGDVFYIPETHHINGMEWINLYN* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0492 212 Coils Coil 136 160 - -
Gso2g0492 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 6 211 - -
Gso2g0492 212 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 211 IPR045224 GO:0003700
Gso2g0492 212 SUPERFAMILY Homeodomain-like 54 117 IPR009057 -
Gso2g0492 212 MobiDBLite consensus disorder prediction 154 174 - -
Gso2g0492 212 MobiDBLite consensus disorder prediction 24 48 - -
Gso2g0492 212 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Gso2g0492 212 Pfam Homeodomain 54 107 IPR001356 GO:0003677
Gso2g0492 212 ProSiteProfiles 'Homeobox' domain profile. 54 109 IPR001356 GO:0003677
Gso2g0492 212 MobiDBLite consensus disorder prediction 158 174 - -
Gso2g0492 212 Gene3D - 48 117 - -
Gso2g0492 212 CDD homeodomain 54 110 IPR001356 GO:0003677
Gso2g0492 212 SMART HOX_1 52 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0492 Gso-Chr2 5194151 5195990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0492 1 211 Homeobox Transcription Factor Family AT4G36740 47.273 2.48e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso2g0492 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0492 K09338 - gmx:100803948 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g1524 1 51916500 51918794 Gso2g0492 2 5194151 5195990 PCT
Gso11g0551 11 4951548 4953822 Gso2g0492 2 5194151 5195990 PCT
Gso2g0492 2 5194151 5195990 Gso1g1524 1 51916500 51918794 PCT
Gso2g0492 2 5194151 5195990 Gso11g0551 11 4951548 4953822 PCT