Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0488 ATGACGGTCGATTTGGACAACGCTTCCACCGCTTCAGGTGAAGCAGCCAGTGTCTCTTCCTCCGGCAATCAGACAAAACCCGCCGCTCCAAAGAAAAAACGAAACCTCCCGGGCATGCCAGATCCGGAGGCAGAGGTGATCGCTCTCTCGCCCAAGACTCTCTTAGCGACGAACCGTTTCGTGTGCGAGATATGCAACAAAGGATTCCAGAGAGACCAGAATCTGCAGCTCCACCGCCGGGGTCACAACCTGCCGTGGAAGCTGCGGCAGAGGTCTAGCAAGGAGGTCAGAAAGAGAGTGTACGTGTGCCCCGAGCCCACGTGCGTGCACCACGACCCTTCCAGAGCGTTGGGGGACTTGACGGGGATTAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAGTGCTCCAAGAAGTACGCGGTTCAGTCCGATTGGAAGGCGCACTCTAAAGTCTGCGGCACAAGAGAGTATAAGTGCGACTGCGGAACCGTTTTCTCCAGGAGGGATAGCTTCATCACGCATAGGGCGTTTTGCGATGCTTTGGCGGAGGAGAACGCCAGATCTCACACTGTTGTAAAAGATATTTCGGAGAATGATTCCAAGGTTTTAATCGGTGATTCGCCACCCCCGCAGCCTGTTGCAGCCACGGTGGCTGCTACTACTGCTGCTGCTACCACCACCACCACTACTACTATTACTTCTACTACGCAGGCAAATAGTGTTATGTCCTCTTGTTTGCAGACGCATAACCTAGATTTGCCAGAAAACAATCCCCCACAAGTCATTGAGGAGCCACAGGCTGCTACTGCTACTGCTATAAGTGGGAGCTGTGGCAGCAGCAGCTCCTGCTCAACTAGCAATGGTGGTGCTACTTGTAATAGTAACAGTAGTAGTAGTGTGTTTGCGAGTTTGTTTGCTTCTTCAACAGCATCTGTGACCCTACAATCTCAAACACCAGCATTCAGTGACTTGATTAGAGCCATGGGGCCTCCGGAACACCCTGCGGATCAAATCTCGGGTCCTTCATCCGAGGCGATCTCTCTTTGCCTCTCCACCACTAGTGCCTCACCAATCTTCGCAACAGGTGGCCGGCAGTATGCGTCGTCTTCACCGCACCCGGCCATGTCAGCCACTGCATTGCTGCAGAAGGCAGCACAAATGGGTGCTGCTGCCACAAACGCCTCCCTTCTTCGCGGGCTTGGCATTGTGTCATCGTCACCTTTGGATTCCACCTCGTCGGGACAGCAAAATGTCCTGCAATGGGGCCACCAACAGCAGTTGGAACCCGAGAGTGGCTCGGTCGCTGCAGCAGGGCTAGGACTTGGTCTTCCATGTGAAGATGGTGGTTCTGGACTAAAGGAATTGATGATGGGAACTTCCTCAATGTTTGGTCCTAAACACACCACTCTTGATTTTCTAGGATTGGGGATGGCTGCCGGTGGCACTGCTGGTGGAGGCTTATCTGCACTTATCACATCTATTGGGGGTGGTTTGGATGTAACTGCAGCCTTTGGCAATGGAGATTTTTCTGGCAAAGATATTGGAAGTAGCTCTTGA 1575 0.5283 MTVDLDNASTASGEAASVSSSGNQTKPAAPKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSRRDSFITHRAFCDALAEENARSHTVVKDISENDSKVLIGDSPPPQPVAATVAATTAAATTTTTTTITSTTQANSVMSSCLQTHNLDLPENNPPQVIEEPQAATATAISGSCGSSSSCSTSNGGATCNSNSSSSVFASLFASSTASVTLQSQTPAFSDLIRAMGPPEHPADQISGPSSEAISLCLSTTSASPIFATGGRQYASSSPHPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSPLDSTSSGQQNVLQWGHQQQLEPESGSVAAAGLGLGLPCEDGGSGLKELMMGTSSMFGPKHTTLDFLGLGMAAGGTAGGGLSALITSIGGGLDVTAAFGNGDFSGKDIGSSS* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0488 524 Gene3D Classic Zinc Finger 40 106 - -
Gso2g0488 524 Gene3D Classic Zinc Finger 114 194 - -
Gso2g0488 524 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Gso2g0488 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Gso2g0488 524 MobiDBLite consensus disorder prediction 1 43 - -
Gso2g0488 524 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Gso2g0488 524 MobiDBLite consensus disorder prediction 1 28 - -
Gso2g0488 524 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 522 - -
Gso2g0488 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 522 - -
Gso2g0488 524 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Gso2g0488 524 SMART c2h2final6 101 131 IPR013087 -
Gso2g0488 524 SMART c2h2final6 136 156 IPR013087 -
Gso2g0488 524 SMART c2h2final6 60 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0488 Gso-Chr2 5156542 5160000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0488 1 524 IDZ Gene Family AT5G66730 56.827 7.61e-175 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso2g0488 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0488 K25869 - gmx:100818698 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0488 2 5156542 5160000 Gso16g1131 16 30155496 30159124 GST
Gso1g1516 1 51858660 51862425 Gso2g0488 2 5156542 5160000 PCT
Gso2g0488 2 5156542 5160000 Gso1g1516 1 51858660 51862425 PCT