Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0473 ATGATGCATCATTGTTGTGGAAGCTCACAGGGGCACGTGATGGGCACTTGCACATGCGGCATGTATCACAATCACAATAGCAGCGAAGCCAGCTCTTATGGGTCGATGCTGTTTTCTATGCCCAACAACAACGAATATTACCAAGAACACGACATCTATTCTTCCTTCACGCCCTCTCATTCCTCCGTCGACTGCACGCTCTCCCTCGGAACCCCCTCCACGCGTTTAACCCAAGACGAGGACGACAACAAACGACACCGTCACCAACGTCGTTCTGGTGTCACCAGTTTTTGCTGGGATCTGCTCCATTCCAATCACAACAACAACAACATCACGCAATCTCAAAGCAAGTCTAGCAGCAGAGGAAGCAACAACAACAACGACTCTCTCCTCGCTCGTCGTTGCGCTAACTGCGACACCACTTCCACTCCCCTCTGGAGGAACGGTCCTCGTGGCCCAAAGTCACTATGCAACGCTTGCGGGATCAGATTCAAGAAGGAACAGAGAAGAGCGAGCGCCGCGGGGGCCACGTCAGCGTCAGCGGCGGTTCCCGGCGGCGCAATGGAATCGGCGCGCGTGTACGGCCACCACCACAACAATTCATGGTACGCACACTCTCAGAGCCAGAAGATGATGGGTAACGAGTTACGCTTCATGGATGATTCCGATGACAGAGACTCGGATAATAATGGCATTCCGTTCCTCTCTTGGAAACTCAACATTCCAGATCGAACGAGCCTGGTTGATGAACGATGGTGA 759 0.5296 MMHHCCGSSQGHVMGTCTCGMYHNHNSSEASSYGSMLFSMPNNNEYYQEHDIYSSFTPSHSSVDCTLSLGTPSTRLTQDEDDNKRHRHQRRSGVTSFCWDLLHSNHNNNNITQSQSKSSSRGSNNNNDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEQRRASAAGATSASAAVPGGAMESARVYGHHHNNSWYAHSQSQKMMGNELRFMDDSDDRDSDNNGIPFLSWKLNIPDRTSLVDERW* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0473 252 MobiDBLite consensus disorder prediction 109 128 - -
Gso2g0473 252 Pfam GATA zinc finger 135 169 IPR000679 GO:0006355|GO:0043565
Gso2g0473 252 PANTHER GATA TRANSCRIPTION FACTOR 18 1 249 - -
Gso2g0473 252 ProSitePatterns GATA-type zinc finger domain. 135 160 IPR000679 GO:0006355|GO:0043565
Gso2g0473 252 PANTHER GATA TRANSCRIPTION FACTOR 18 1 249 IPR044272 GO:0003700|GO:0009908
Gso2g0473 252 ProSiteProfiles GATA-type zinc finger domain profile. 129 165 IPR000679 GO:0006355|GO:0043565
Gso2g0473 252 Gene3D - 131 185 IPR013088 GO:0006355|GO:0008270
Gso2g0473 252 CDD ZnF_GATA 134 166 IPR000679 GO:0006355|GO:0043565
Gso2g0473 252 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 170 - -
Gso2g0473 252 SMART GATA_3 129 184 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0473 Gso-Chr2 4994294 4996240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0473 18 248 C2C2-Gata Transcription Factor Family AT3G50870 42.908 6.14e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso2g0473 GATA 1.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0473 - - gmx:100799154 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0473 2 4994294 4996240 Gso16g1116 16 29931137 29933409 GST
Gso11g0582 11 5201719 5203446 Gso2g0473 2 4994294 4996240 PCT
Gso2g0473 2 4994294 4996240 Gso1g1383 1 50490253 50498992 PCT