Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0469 ATGGACATGAGAGAGCAAGATAAGGTTATAGAGATGCCTAGCACTTTGGGTTATAATAACTCCTCTTCTGGTTCCAAGCTATCATCACCAATAGGTGAAAGAAGTAGTGACCAATTACCTCCTCATCAATCTCACACATTAGTTTTCACTGATCCACCCCAAACTTCTTCACATCATCATAATCTCTATCCCCCTTCACTCCCACCAAACCCTCTTCAACTTCCACAACCTCATCACAGACCCAGAAGAGATCCAGATCCAAGTTCTATTATTTCTCCTCCTATCATAAGCACCACCCCAACAACAGCACCACCACAACCACACACAACAACATTATTCAGATACCGAGAATGTCTGAAGAATCATGCTGCAAGCATGGGAGGTCATGTCACAGATGGGTGTGGAGAGTTCATGCCAAATGGAGAAGAGGGCACCCCAGAATCCTTAAAGTGTGCAGCTTGTGAGTGCCACCGCAATTTCCACAGAAAAGAACCTCATCAAGGAGTACTAGTAGAGTCACAACTACAACATGTTCTTCTCAACAAAAACAATAGGAACATAAACACTATTATTCATTCTCCAGACTCTCATCACCACCTTCAGTTTCCTACACCACACTCTCATCTTCATGGTGGGCCGCCTGTTGTTCAGCCCGTGATGTTGGGCTTTGGGGGATCAGGCCCAGCTGAGTCCTCAAGCGAAGATCTCAACATGTTTCAGACCAATGATCATGGAGGAGGAGGGAACAACTTGTTATTATCATCAGTGCAGCAGCAGCCACCACTACTCTCATCATCATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGCAACAGAAAGATAGGATGATGGAGTTTGCTGAGAAACTTGGGTGGAAGATCCAGAAACAAGATGAACAGGAACTGCATCAGTTTTGCTCCCAGGTTGGTGTAAGAAGACAGGTTTTCAAGGTTTGGATGCACAACAGCAAGCAAGCCTTGAAGAAGAAGCAAATGTAA 1002 0.4471 MDMREQDKVIEMPSTLGYNNSSSGSKLSSPIGERSSDQLPPHQSHTLVFTDPPQTSSHHHNLYPPSLPPNPLQLPQPHHRPRRDPDPSSIISPPIISTTPTTAPPQPHTTTLFRYRECLKNHAASMGGHVTDGCGEFMPNGEEGTPESLKCAACECHRNFHRKEPHQGVLVESQLQHVLLNKNNRNINTIIHSPDSHHHLQFPTPHSHLHGGPPVVQPVMLGFGGSGPAESSSEDLNMFQTNDHGGGGNNLLLSSVQQQPPLLSSSSSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQELHQFCSQVGVRRQVFKVWMHNSKQALKKKQM* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0469 333 MobiDBLite consensus disorder prediction 13 63 - -
Gso2g0469 333 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 114 164 IPR006456 -
Gso2g0469 333 Pfam ZF-HD protein dimerisation region 113 165 IPR006456 -
Gso2g0469 333 Gene3D - 257 330 - -
Gso2g0469 333 MobiDBLite consensus disorder prediction 1 107 - -
Gso2g0469 333 MobiDBLite consensus disorder prediction 242 273 - -
Gso2g0469 333 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 269 326 IPR006455 -
Gso2g0469 333 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 115 164 IPR006456 -
Gso2g0469 333 SUPERFAMILY Homeodomain-like 262 330 IPR009057 -
Gso2g0469 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 58 331 - -
Gso2g0469 333 MobiDBLite consensus disorder prediction 91 107 - -
Gso2g0469 333 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0469 Gso-Chr2 4943491 4945615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0469 92 333 ZF-HD Transcription Factor Family AT2G18350 48.163 2.00e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso2g0469 ZF-HD_dimer 2.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0469 - - gsj:114382190 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0469 2 4943491 4945615 Gso16g1107 16 29830473 29832477 GST
Gso1g1497 1 51633198 51635293 Gso2g0469 2 4943491 4945615 PCT
Gso11g0583 11 5216820 5219416 Gso2g0469 2 4943491 4945615 PCT
Gso2g0469 2 4943491 4945615 Gso1g1497 1 51633198 51635293 PCT
Gso2g0469 2 4943491 4945615 Gso11g0583 11 5216820 5219416 PCT