Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0468 ATGGGAACTGATGGCGGTGAACAGATAGAGACATTACCAAATCCTCGCTCCTTTAAGGTACATCGTACAATGTGCACAGAACTCAGGAAATTAGTTGATAGGATATTGCGGATTATTCCACAGATAGAAGCAGCACGCCCTTGTGGAATGCAGGCTCTGTGTTTGCTGAACAAGGCAATTGATAAAGCCAGACAACTGCTGCTATACTGCTCCGAAACTAGTAAACTTTACCTGGCAATAACAGGGGATTCCATACTCTCAAAATTCCAGAAGGCAAGAAAATCGTTAGCCAAAAGCTTAGTCCAGATTCTGAATATGGTTCCAGTTATGTTGGCTGCAGAGATTTCTCGACTAATTGGTGATCTTGAGTGTGTGACATTTGTCTTCGACTCTGCTGAAGAAGCAGCTGGGAAGGTTGTGAAACGATTGCTCCAGCAAGATCCTTCAACGTCAGATAAAGATTTAATGGAGGAATCTGAAATAAAAGATTTTCAGTTTGTAGCAGCAAGACTTGGTATTACATCCCCAACGGCCATCCTAATAGAGAAACGATCTATTAAGAAGTTGCTAGAAAAACTCAAACGAAATGACCAGACAAAAGAGATTGTCTTGAAAAATCTTTTGTTTCTCCTGATAAAGCACCGGAAATCAATCACAGGAGAACAAATGGAGGTCTATTCTCAAATTGAAGTACCAATTACAACTGAGAACTCAGGTCATGAGTCTCAAGAAAACCTTCATGTCAAGTCAGACCCATACTTGAGCCATGGTCAGTATAGAACTCATGCCGGTGATTTGAGCAGACTTACACCTCCTAAGGAATATACATGTCCAATATCTTTAAGGTTGATGTATGACCCTGTTGTCATTGCTTCAGGAAAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATACTATATGCCCCAAAACTAAAAAGAAACTGGTTCATATGGCATTGACTCCAAACATTGCCTTAAAGGACTTAATATTAAAGTGGTGTGAAACTAATGGAGTCTCCATTCCTGACCCGAGTAGGCTAGTGCAAGATTGTCACTCATGGGAAGCTTCCTCCAACTCCATTAGGAGTTTTGGAAGTTCTTTGTATGATTTGAACTTCCCAACGGATTTTAGTAACATGTCTCTTGGATCATTAGATACCAATTATAATTCAGATTCCTCCCACACTAAGGCCAATCATAGCTTAAATTTGATGTTGAACAAGAGCAGTGACAATTCACACAGGCATCAATCTCGTGCACGGATACATGATGCTGATTGGATGCATTTGTCTAAACTCCATGAGCGTCAATGGGAATCTCAATGCCAAGTCATTGAAAATATAAAAATGGATTTCAAATGCAATTGCCAAGCTTTTTGCTGTGTGTCATCTGAGAATTTCATTGACCCACTCACGAGATTTCTGAGCACTGCGTGTGAGCGGCATGATGTAAAAGCTCTGAGAGCAGGAACTAAGTTGCTATTGGAATTTATGAAGTGTTGCAGAAATGGTATGACCAATTTAAGTGAAGATACGTGCATTATGTTGGAAAGTCTTCTTGATACAGAAGTGATTGGTGAAGCTCTCACCATAATGGAAGAACTGACAGGGAATTGGTATGAAAAAACTAACATTGCAGCTTCCAGTGTACTCTCTTCTGTTTCAAAGATCCTTGATTCAGGTAATGAAGAGTTCCGACGAAAAGCTATTAAAATAATGAATAATTTTTCATCCAATGGTCAAATTTGTCCCTACATGGTGTCTCTCGGGTGCATCCCAAAATTACTGCCATTTTTTGAAGACAGAACCCTTTTGAGAGACAGTATACATATTTTGAAAAACCTTTGTGATACTGAAGAGGGTAGGGTTACTGTTGTTGAAACAAAAGGATGCATATCTTCTGTTGTTGAAATACTTGAGACTGGCAGTGATGAGGAAAAAGAATCTGCGCTGGTTATTCTTCTCTCCTTATGCTCTCAACGTGTGGAATACTGTCAGTTGGTTATGTATGAGGGGATTATTCCTTCTCTTGTCAACATCTCCAACAAAGGAAGTGATATGGCAAAGGCTTATGCATTAGAACTACTCCGTCTTTTGAAGGGTGATAGCGAGTTTGAGTATGAAGATTGTTGTGAGCCAAATCTCAACGGCTCTCAAGAACCTAACAACAATCACTATCAAGAAAAGAAATCGTCAAAGAAACCGTCAATTTTGAAGAAACTGTCACTCTTCTCAAAATCCATTTCAGTTGCACCAAAAACCAAGAGATGA 2283 0.3951 MGTDGGEQIETLPNPRSFKVHRTMCTELRKLVDRILRIIPQIEAARPCGMQALCLLNKAIDKARQLLLYCSETSKLYLAITGDSILSKFQKARKSLAKSLVQILNMVPVMLAAEISRLIGDLECVTFVFDSAEEAAGKVVKRLLQQDPSTSDKDLMEESEIKDFQFVAARLGITSPTAILIEKRSIKKLLEKLKRNDQTKEIVLKNLLFLLIKHRKSITGEQMEVYSQIEVPITTENSGHESQENLHVKSDPYLSHGQYRTHAGDLSRLTPPKEYTCPISLRLMYDPVVIASGKTYERMWIQKWFDEGNTICPKTKKKLVHMALTPNIALKDLILKWCETNGVSIPDPSRLVQDCHSWEASSNSIRSFGSSLYDLNFPTDFSNMSLGSLDTNYNSDSSHTKANHSLNLMLNKSSDNSHRHQSRARIHDADWMHLSKLHERQWESQCQVIENIKMDFKCNCQAFCCVSSENFIDPLTRFLSTACERHDVKALRAGTKLLLEFMKCCRNGMTNLSEDTCIMLESLLDTEVIGEALTIMEELTGNWYEKTNIAASSVLSSVSKILDSGNEEFRRKAIKIMNNFSSNGQICPYMVSLGCIPKLLPFFEDRTLLRDSIHILKNLCDTEEGRVTVVETKGCISSVVEILETGSDEEKESALVILLSLCSQRVEYCQLVMYEGIIPSLVNISNKGSDMAKAYALELLRLLKGDSEFEYEDCCEPNLNGSQEPNNNHYQEKKSSKKPSILKKLSLFSKSISVAPKTKR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0468 760 MobiDBLite consensus disorder prediction 718 738 - -
Gso2g0468 760 Pfam U-box domain 272 341 IPR003613 GO:0004842|GO:0016567
Gso2g0468 760 CDD RING-Ubox_PUB 277 317 IPR045210 -
Gso2g0468 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 345 IPR013083 -
Gso2g0468 760 Gene3D - 433 605 IPR011989 -
Gso2g0468 760 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Gso2g0468 760 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Gso2g0468 760 PANTHER U BOX DOMAIN-CONTAINING 2 753 - -
Gso2g0468 760 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 753 - -
Gso2g0468 760 SUPERFAMILY ARM repeat 437 708 IPR016024 -
Gso2g0468 760 Gene3D - 606 715 IPR011989 -
Gso2g0468 760 SUPERFAMILY RING/U-box 266 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0468 Gso-Chr2 4905221 4910894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0468 15 713 U-box Gene Family AT4G36550 38.042 5.77e-140 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0468 - - gmx:100797572 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0468 2 4905221 4910894 Gso16g1105 16 29776063 29781742 GST
Gso1g1495 1 51590990 51597509 Gso2g0468 2 4905221 4910894 PCT
Gso11g0586 11 5252464 5258257 Gso2g0468 2 4905221 4910894 PCT
Gso2g0468 2 4905221 4910894 Gso1g1495 1 51590990 51597509 PCT
Gso2g0468 2 4905221 4910894 Gso11g0586 11 5252464 5258257 PCT