Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0449 ATGGAGTTTGCCCGTTTCCATCTTCAGCATCAGCTCCAAGAAGAATCTACTCAGTGTATAACTTCAACAATCCCACCACCTGACTCTACACCTTCCTTTATCACTAATCAATCATGGATCCCAAGCAACATGTACAATGGCTATGACCGTGGGTTTCTAACTGATCAGTGCTTCACAAATTCAAGAGAGCTACAACTGAAGCACGCCATGACTGATTCACTTAGAATTTCAACAAGGCAAGCCTTTGGTTTTCACAATGGAAAAAGCCTCATAACTCAGCATCCAGTTAGTGATAATAATAATCTCTTTCCTGCAAGAATCTTCAAAGGTGGAATGATCAATACCTCCATGAAGGGTATGGAGGAATCATCACAATATTCTTCTCCTAGTTTCTTATCTAGTATTGGTGTAACTGGTGAAGAGTTTTTTCCCAATGACAGGCCTATAGATGGAGGAACCCTAAGCAAGAGATATAATAATAACTTTGGCGATGTTTCCTTAATTTCAAATTTACCAACCCTAGATATGGCCTCTTCCTTAGTTTCATGTTCTTTGGGATTAAACCCTAAAATGTTTGATCTGCATACAAGTTATGGTGGGAGTTGTGGATTAATCCAACCTTGCTATGATACTTTTGGTCTTAACGAGAGCATATCTTTGAGTCGCAGCCATATGCATGGCCGTGAAAACAGTCCATCAAACAGCTCAAGTAAAACTTCATCATTTGTAAGTGAAGTTGCAACGAAGAAAAGGCCTAGCAATTGCTCTCTACCAAAAGAATCTGAAGCAAAAGTTAAGAAGTCAAGGCCATCATGCCCGCCCCTGAAGCAGGTAAGAAAGGAAAAATTGGGGGATAGGATCCAAACTCTTCAGAGACTAGTGGCACCTTTCGGAAAGACCAGTACAGCCTATGTGTTGAGTGAAGCCATTGGCTACATCCATTTCCTTCACCAACAAATTCAGACTTTGAGCATCCCTTACATGAAATCCGCACAAAGCAAGCCCTCTAGAATGGTGCAGCTGGATTCAAATAAGGTAGATAGAAGAGAATTCATGCCAGACCTTCGAAGCAGAGGCTTGTGTCTTGTGCCCCTTTCTTATGCATCATTTATTCATCGTTGTGTTTAG 1128 0.4105 MEFARFHLQHQLQEESTQCITSTIPPPDSTPSFITNQSWIPSNMYNGYDRGFLTDQCFTNSRELQLKHAMTDSLRISTRQAFGFHNGKSLITQHPVSDNNNLFPARIFKGGMINTSMKGMEESSQYSSPSFLSSIGVTGEEFFPNDRPIDGGTLSKRYNNNFGDVSLISNLPTLDMASSLVSCSLGLNPKMFDLHTSYGGSCGLIQPCYDTFGLNESISLSRSHMHGRENSPSNSSSKTSSFVSEVATKKRPSNCSLPKESEAKVKKSRPSCPPLKQVRKEKLGDRIQTLQRLVAPFGKTSTAYVLSEAIGYIHFLHQQIQTLSIPYMKSAQSKPSRMVQLDSNKVDRREFMPDLRSRGLCLVPLSYASFIHRCV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0449 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 329 IPR036638 GO:0046983
Gso2g0449 375 MobiDBLite consensus disorder prediction 223 251 - -
Gso2g0449 375 PANTHER TRANSCRIPTION FACTOR BHLH110-LIKE 1 371 - -
Gso2g0449 375 Gene3D - 274 340 IPR036638 GO:0046983
Gso2g0449 375 MobiDBLite consensus disorder prediction 255 275 - -
Gso2g0449 375 MobiDBLite consensus disorder prediction 223 275 - -
Gso2g0449 375 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 371 - -
Gso2g0449 375 CDD bHLH_AtbHLH_like 273 324 IPR045239 -
Gso2g0449 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 316 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0449 Gso-Chr2 4759393 4763327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0449 220 370 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 50.323 1.60e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0449 - - gmx:100782565 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0449 2 4759393 4763327 Gso16g1076 16 29241239 29245867 GST