Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0440 ATGGCGGGGTTATTCTCATTAGGAGGAGGAGGAGGAGGGCGAGGAAACAACAACAACAACCAAAGCAGCGAGATTCCACCAGCGGAGACCCTATTCTGGTACAGCAGCAAAAACGACGACGTTTCGTCCTACCACCGAGGGTTTGAGCTATGGAACCAGCAGGACCAGCACCACCATCACCATCATCACGTGATGCATCCACATGCGCGTCCTCTCCTGCAGCGAGATCTTTACTCGTCAGGAGTTGGGCCCAGCCGCGGCGGCGGCGGCGTCTCCGATGATGATCACTCGTCGTCGAGATCGGCTGCGTTGGTGGCGATGCGCGCAGCCGCGGCCGCGGAGGGAGGAATAAGCTGCCAGGACTGCGGCAACCAGGCCAAGAAAGACTGCCCTCACATGCGGTGCAGGACGTGCTGCAAGAGCCGCGGGTACGACTGCCAAACCCATGTGAAAAGCACATGGGTTCCGGCTTCTAAACGCCGCGAGCGTCAGCAAGCACTCGCCGCGTTACAGCAGCAACAGCAAGAACAACAACAACAGCAACAGAGAGATATTTCCAAGAGGCCGAGAGACCCGACCTCTTGCACTCGTTTACCCTCGTCAGGGTTAGAGGAAGAAGGGAATTTTCCTTCTGTGGTGAGTTCTCCAGCTGAATTCAGATGCGTGAGGGTTAGCTGCGTGGAAGATGCTGATGATAGATACGCATACCAAACCGCTGTGAGCATAGGAGGACATGTGTTCAAAGGAATCCTCTATGACTATGGTCCTGAAAATAATAACCACAACAACAGTAATAATAATAGTAATAATAATTACACGGCTGGAGAAACCTCTGCTGGTGTTGTTGCTGCAGCTCAGCCCTTGAACCTTGCTGCTATTTCTTCAGCTGCACTTGTTGATACTTCCTCTTTGTATTCGGCTCCGGTTAACGCATTCATGGCTGGTGGTAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA 984 0.5305 MAGLFSLGGGGGGRGNNNNNQSSEIPPAETLFWYSSKNDDVSSYHRGFELWNQQDQHHHHHHHVMHPHARPLLQRDLYSSGVGPSRGGGGVSDDDHSSSRSAALVAMRAAAAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQALAALQQQQQEQQQQQQRDISKRPRDPTSCTRLPSSGLEEEGNFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVSIGGHVFKGILYDYGPENNNHNNSNNNSNNNYTAGETSAGVVAAAQPLNLAAISSAALVDTSSLYSAPVNAFMAGGSGTQFFPHTRS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0440 327 MobiDBLite consensus disorder prediction 1 24 - -
Gso2g0440 327 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 209 256 IPR006511 -
Gso2g0440 327 MobiDBLite consensus disorder prediction 77 102 - -
Gso2g0440 327 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 118 160 IPR006510 -
Gso2g0440 327 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 327 IPR007818 GO:0003700|GO:0006355
Gso2g0440 327 Pfam Domain of unknown function (DUF702) 116 257 - -
Gso2g0440 327 PANTHER TRANSCRIPTION FACTOR STY-LRP1 FAMILY-RELATED 1 327 - -
Gso2g0440 327 Coils Coil 160 183 - -
Gso2g0440 327 MobiDBLite consensus disorder prediction 169 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0440 Gso-Chr2 4649014 4652340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0440 1 327 C2H2 Transcription Factor Family AT3G51060 42.820 3.14e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso2g0440 DUF702 1.8e-65 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0440 - - gmx:100789129 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0440 2 4649014 4652340 Gso16g1069 16 29074065 29077186 GST