Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0433 ATGAAAGAAAGAGGCACATTTCAGCCCTTATTCAATGCTTTACCAAACTCACTCATCATCCTCCAGTCTTTCAATTTCATCCCTTCACTTCTTTCCACAACCCCATCATCTTTTCCCTCTTTTCTTCTCTCTCAGGCGGAGAAAGAAATGGAGTGTTTGGAAGCAGCGTTGAAGAGCAGTTTCAGGAAAGACATGGCCCTCAAACAAACGTTGTTCCTAGAGGAGTTCTCGTCCGCCTCTAACGTTCAAAACGTCGTCGCTTCCTCCGACGACTTGTTCGTTGACGACCTCCTCAACTTTTCACTCCTCGAAAACAACACCAACAACAATAACAACAACGAAGAACCCGACCAACAACTCAACAACCACGACTCCACCACCCCTCAGAACAACCAGGAAAATTACAATTATAACCCCTCCTTCAACGACAACAATTTCAACACCGAACTCACCGTTCCGGCGGAGGAGGAAGTTGCGGACTTGGAATGGTTGTCTCGTTTCGTCGAAGATTCTAATTTCTCGGAATATTCTCTTCCCTTCCCCGCAACCGTGACTGAGAAAGTGAAAGTGAAATCACCGGAACCGGGAAATACCGCTTTCACTTTCAAAACCCCGGTTCCGGCCAAGGCCAGGAGCAAGCGAACGCGAACCGGTGTCCGGGTTTGGCCGCTCAAGTCACCCTCTTTGGCCGCCGCGTCTTCAACAACAACCTCGTCCTCGTCCTCGTCTTCGCCCTCGAGTCCGCAACGTGCGGACTCGAGGGCGAAGAAGCGTGCCGCTGCGGACGGCGGCGCGGCGCGACGGTGCAGCCACTGTGGCGTTCAGAAAACGCCGCAGTGGCGCACCGGACCGCTCGGGGCTAAGACTCTGTGCAACGCGTGTGGGGTCCGCTACAAGTCGGGTCGGTTATTACCCGAATATAGACCCGCCTGTAGCCCTACTTTCTCCAGCGAGTTGCACTCCAACCACCACCGAAAGGTCCTCGAGATGCGGCGGAAGAAGGAGGACGTGCCTGAGCCCGACACCGCTTCGCCACCGTCGCTTCCCGGTTTTTGA 1056 0.5379 MKERGTFQPLFNALPNSLIILQSFNFIPSLLSTTPSSFPSFLLSQAEKEMECLEAALKSSFRKDMALKQTLFLEEFSSASNVQNVVASSDDLFVDDLLNFSLLENNTNNNNNNEEPDQQLNNHDSTTPQNNQENYNYNPSFNDNNFNTELTVPAEEEVADLEWLSRFVEDSNFSEYSLPFPATVTEKVKVKSPEPGNTAFTFKTPVPAKARSKRTRTGVRVWPLKSPSLAAASSTTTSSSSSSSPSSPQRADSRAKKRAAADGGAARRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEDVPEPDTASPPSLPGF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0433 351 MobiDBLite consensus disorder prediction 320 340 - -
Gso2g0433 351 MobiDBLite consensus disorder prediction 105 144 - -
Gso2g0433 351 ProSiteProfiles GATA-type zinc finger domain profile. 263 299 IPR000679 GO:0006355|GO:0043565
Gso2g0433 351 CDD ZnF_GATA 269 316 IPR000679 GO:0006355|GO:0043565
Gso2g0433 351 MobiDBLite consensus disorder prediction 201 273 - -
Gso2g0433 351 Pfam GATA zinc finger 269 303 IPR000679 GO:0006355|GO:0043565
Gso2g0433 351 MobiDBLite consensus disorder prediction 228 250 - -
Gso2g0433 351 Coils Coil 43 63 - -
Gso2g0433 351 ProSitePatterns GATA-type zinc finger domain. 269 294 IPR000679 GO:0006355|GO:0043565
Gso2g0433 351 PANTHER GATA TRANSCRIPTION FACTOR 50 335 - -
Gso2g0433 351 SMART GATA_3 263 317 IPR000679 GO:0006355|GO:0043565
Gso2g0433 351 PANTHER GATA TRANSCRIPTION FACTOR 50 335 - -
Gso2g0433 351 Gene3D - 262 336 IPR013088 GO:0006355|GO:0008270
Gso2g0433 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 261 325 - -
Gso2g0433 351 MobiDBLite consensus disorder prediction 320 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0433 Gso-Chr2 4547009 4548663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0433 54 351 C2C2-Gata Transcription Factor Family AT5G66320 45.272 3.16e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso2g0433 GATA 5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0433 - - gmx:100786449 581.637