Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0425 ATGAGAACTCGAAACGCCGATTCCGCCTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGAAGAAATCCCCTGCGGCCAAGCGCACCACCGCCACCAAAACCAGAGCCACCAAGAAGAACGAGCTCTCGCCCGCACCCGATTCCAACCCCGATCAATCTCCTCTGGAACAGAAATCGTTAGGCAGTGCTAGCAGCGCAAAATCTGTGAAAAAGAAGACTCCGGGGAGATCGAGAAGTAAAGCAATCAATACTCCGAATTCGGAAGAACAATGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGATGATACCGAGGTAGCAGAGAAAGTGGAAGATGTTGGAGTGGTTGATGCAGATAATGTTGAGGGTGAGAAGGAGGGGGGAAAAGGTGTTGGTTCTGTTGGATTGTCTGATGAGACGGATCGTAAGTCGATGGAAGTGGATGAACTTGTTCAAAAGGTTTGTGAATCTGTGGGAAAGGAAAATGATGTAATGGAAGTTGAAGTAGCTGCTTGCTGGGATGCTTCTGTTTCTTTTAGGCGACCAGGGCGACCTATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAATGGAAGGAAGAGTTGAAAGATCAAGAGGGGGACAAAGGGAAGGAAGAGTTGAAAAAACAGGAAGGAGACAACGGGAAGGAAGAGTTGAAAGAACTGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGAAAAAGGTGAGGAAGAGTTGACAGAACTGGAAGGAGAGAAAGGAAATGTTGAATTGAAAGAACAGAAAGGAGACAAAGGAAAGGAAAAGTTGAAAGAGCAGGAGCCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACTCTGAGTCTTTTGGTGTAGAAGGTGAAGCCCAGATGCAAAAAGAAGATGCTAATCCTATTAAAGATGGCGGTGAAGGACCAAAGATTGGTGAAAATTCAGATCTTGGAGAACAAGGGAAGGTGGAGCTTGTTGAAGATCCAGAAGAAAACCCTGAAGAAGATCCAGAGGAACCTCCAGAAGAAACTTCGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAAGAACACGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATCGGGGAGATAGTTGAAGTCAGATTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTTCTGATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGCAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAGCATGAGGGCTTGAGCTGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATGTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAGTTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCAAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGGAATTTCAACTGGAGCAGGAGTTTCTATCGTGGTGGGCACAGCCAAATTGGAAGAATGGGTTTTCAGGATGACCATGATTTTAGTATGCATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGATAGAGCATGGTATGGTATTCCCGATGGAGGCCCTATTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTCTATGGGAAGGCATTTTGATGATCCATATCTGTATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTAATAGATTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCTCCTGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTTATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAG 2655 0.4475 MRTRNADSASKSATPKKTPPKKSPAAKRTTATKTRATKKNELSPAPDSNPDQSPLEQKSLGSASSAKSVKKKTPGRSRSKAINTPNSEEQCEAVADETPIEDDTEVAEKVEDVGVVDADNVEGEKEGGKGVGSVGLSDETDRKSMEVDELVQKVCESVGKENDVMEVEVAACWDASVSFRRPGRPIVDLNISADNEDCTGEKEGEKWKEELKDQEGDKGKEELKKQEGDNGKEELKELEGEKGKEELKELEGEKGEEELTELEGEKGNVELKEQKGDKGKEKLKEQEPEKAKGEETNLFGHEENSESFGVEGEAQMQKEDANPIKDGGEGPKIGENSDLGEQGKVELVEDPEENPEEDPEEPPEETSALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFQISHARSGAFSRPGRGFGRGRQPFNNRGNFNWSRSFYRGGHSQIGRMGFQDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFDMPSMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGAGSRQYPPDYYGSDYGRGSYLSYYGGDGSHGHGYYY* 885
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0425 884 MobiDBLite consensus disorder prediction 195 301 - -
Gso2g0425 884 SMART rrm1_1 390 463 IPR000504 GO:0003723
Gso2g0425 884 SMART rrm1_1 568 643 IPR000504 GO:0003723
Gso2g0425 884 SMART rrm1_1 470 550 IPR000504 GO:0003723
Gso2g0425 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 554 IPR000504 GO:0003723
Gso2g0425 884 MobiDBLite consensus disorder prediction 195 372 - -
Gso2g0425 884 CDD RRM_SF 569 643 - -
Gso2g0425 884 Gene3D - 337 463 IPR012677 -
Gso2g0425 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 567 647 IPR000504 GO:0003723
Gso2g0425 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 391 459 IPR000504 GO:0003723
Gso2g0425 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 635 IPR000504 GO:0003723
Gso2g0425 884 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 535 IPR000504 GO:0003723
Gso2g0425 884 MobiDBLite consensus disorder prediction 109 126 - -
Gso2g0425 884 MobiDBLite consensus disorder prediction 350 366 - -
Gso2g0425 884 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 389 467 IPR000504 GO:0003723
Gso2g0425 884 SUPERFAMILY RNA-binding domain, RBD 390 534 IPR035979 GO:0003676
Gso2g0425 884 MobiDBLite consensus disorder prediction 1 146 - -
Gso2g0425 884 SUPERFAMILY RNA-binding domain, RBD 559 663 IPR035979 GO:0003676
Gso2g0425 884 MobiDBLite consensus disorder prediction 25 70 - -
Gso2g0425 884 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 268 877 - -
Gso2g0425 884 Gene3D - 556 710 IPR012677 -
Gso2g0425 884 MobiDBLite consensus disorder prediction 94 108 - -
Gso2g0425 884 PANTHER NUCLEOLIN-LIKE ISOFORM X1 268 877 - -
Gso2g0425 884 CDD RRM_SF 471 534 - -
Gso2g0425 884 CDD RRM_SF 391 459 - -
Gso2g0425 884 Gene3D - 468 553 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso2g0425 Gso-Chr2 4445081 4451999 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0425 391 635 Eukaryotic Initiation Factors Gene Family AT2G23350 23.016 1.33e-15 79.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0425 - - gmx:100784338 1479.92
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0425 2 4445081 4451999 Gso16g1048 16 28534384 28541813 GST