Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso2g0425 | ATGAGAACTCGAAACGCCGATTCCGCCTCCAAATCCGCAACCCCTAAGAAGACGCCGCCGAAGAAATCCCCTGCGGCCAAGCGCACCACCGCCACCAAAACCAGAGCCACCAAGAAGAACGAGCTCTCGCCCGCACCCGATTCCAACCCCGATCAATCTCCTCTGGAACAGAAATCGTTAGGCAGTGCTAGCAGCGCAAAATCTGTGAAAAAGAAGACTCCGGGGAGATCGAGAAGTAAAGCAATCAATACTCCGAATTCGGAAGAACAATGTGAGGCAGTAGCTGATGAAACTCCAATTGAAGATGATACCGAGGTAGCAGAGAAAGTGGAAGATGTTGGAGTGGTTGATGCAGATAATGTTGAGGGTGAGAAGGAGGGGGGAAAAGGTGTTGGTTCTGTTGGATTGTCTGATGAGACGGATCGTAAGTCGATGGAAGTGGATGAACTTGTTCAAAAGGTTTGTGAATCTGTGGGAAAGGAAAATGATGTAATGGAAGTTGAAGTAGCTGCTTGCTGGGATGCTTCTGTTTCTTTTAGGCGACCAGGGCGACCTATTGTGGATCTCAATATATCTGCGGATAATGAAGATTGTACTGGTGAAAAGGAGGGAGAGAAATGGAAGGAAGAGTTGAAAGATCAAGAGGGGGACAAAGGGAAGGAAGAGTTGAAAAAACAGGAAGGAGACAACGGGAAGGAAGAGTTGAAAGAACTGGAAGGAGAGAAAGGAAAGGAAGAGTTGAAAGAACTGGAAGGAGAAAAAGGTGAGGAAGAGTTGACAGAACTGGAAGGAGAGAAAGGAAATGTTGAATTGAAAGAACAGAAAGGAGACAAAGGAAAGGAAAAGTTGAAAGAGCAGGAGCCAGAGAAAGCAAAGGGAGAGGAAACAAACCTTTTTGGACATGAAGAGAACTCTGAGTCTTTTGGTGTAGAAGGTGAAGCCCAGATGCAAAAAGAAGATGCTAATCCTATTAAAGATGGCGGTGAAGGACCAAAGATTGGTGAAAATTCAGATCTTGGAGAACAAGGGAAGGTGGAGCTTGTTGAAGATCCAGAAGAAAACCCTGAAGAAGATCCAGAGGAACCTCCAGAAGAAACTTCGGCATTGGAGGAGGAGCATAGGGAATTGGAGGCTATTGCAAATCAGCGAAAGATTAAAAAAGAACACGAGATTTTTGTTGGTGGATTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAGAGGATCGGGGAGATAGTTGAAGTCAGATTGCATAAGAATTCTTCAACAAATAAAAACAAGGGCTATGCTTTTGTGAAGTTTTCTGATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGCAAACGGTGTGGCACTGCACCTAGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACTTGGACCAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAGCATGAGGGCTTGAGCTGGGGCTTTGCATTCCTAGAGTTCTCTTGTCATGCAGATGCCATGCTTGCATATAAGAGGCTTCAAAAGCCCGATGTTATGTTTGGCCATGCTGAGCGAACAGCTAAGGTAGCCTTTGCTGAACCCATACGTGAACCAGACCCAGAGATAATGGCACAGGTGAAGTCTGTGTTTATTAATGGTCTCCCTCCACATTGGGACGAAGATCATGTGAGGGAGCTGTTTAAATCTTATGGTGAAGTTGTAAGAATTGTGCTAGCACGGAATATGTCTTCAGCTAAGAGGAAGGATTATGGATTTGTTGATTTTTCTACACATGAAGCTGCTGTAGCTTGTGTTGATGGCGTAAATAAATCAGAATTGGGTGATGGGGCATCAAAGATAAAAGTGAGAGCTAGACTTTCAAATCCTCTGCCTAAAACACAGGCTGTCAAAGGTGGTATGTGTGGTGGGTTCCAAATAAGTCATGCTAGGAGTGGAGCCTTTTCAAGACCAGGAAGGGGGTTTGGGCGGGGAAGACAGCCCTTCAACAACAGGGGGAATTTCAACTGGAGCAGGAGTTTCTATCGTGGTGGGCACAGCCAAATTGGAAGAATGGGTTTTCAGGATGACCATGATTTTAGTATGCATCCAGATTTCCGTCAAAGGCAATTTGGTCCACAAGGAGCTGTGAGGGGTGGACATTATGCAGGTAGCCGAGGTGCTGCATTTGCTGGACCATCTAGACCTTATCATGATAGAGCATGGTATGGTATTCCCGATGGAGGCCCTATTGAGCCTATTCCTCCAAGGAGGCCCTACTCCCCAGGTGGACAGTTTGACATGCCTTCTATGGGAAGGCATTTTGATGATCCATATCTGTATGATGACAATATGCATGGAATGAAACGTCCATTTTATATGACTGACCCTGAGCCTGATTACATGGGGCCTAATAGATTACGTCCTCGATTGGATTATGCAGATCCACCTATATTTCATGGAACTCATCACCATGATTCTTTTGGGGCTGGCAGCAGACAGTACCCTCCTGACTATTACGGTTCTGATTATGGTAGAGGTTCATATTTATCTTATTATGGGGGTGATGGCTCACATGGGCATGGATACTATTATTAG | 2655 | 0.4475 | MRTRNADSASKSATPKKTPPKKSPAAKRTTATKTRATKKNELSPAPDSNPDQSPLEQKSLGSASSAKSVKKKTPGRSRSKAINTPNSEEQCEAVADETPIEDDTEVAEKVEDVGVVDADNVEGEKEGGKGVGSVGLSDETDRKSMEVDELVQKVCESVGKENDVMEVEVAACWDASVSFRRPGRPIVDLNISADNEDCTGEKEGEKWKEELKDQEGDKGKEELKKQEGDNGKEELKELEGEKGKEELKELEGEKGEEELTELEGEKGNVELKEQKGDKGKEKLKEQEPEKAKGEETNLFGHEENSESFGVEGEAQMQKEDANPIKDGGEGPKIGENSDLGEQGKVELVEDPEENPEEDPEEPPEETSALEEEHRELEAIANQRKIKKEHEIFVGGLDRDATEEDLRKVFQRIGEIVEVRLHKNSSTNKNKGYAFVKFSDKEHAKKALSEMKNPVIHGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGIEGVENITLVPDVQHEGLSWGFAFLEFSCHADAMLAYKRLQKPDVMFGHAERTAKVAFAEPIREPDPEIMAQVKSVFINGLPPHWDEDHVRELFKSYGEVVRIVLARNMSSAKRKDYGFVDFSTHEAAVACVDGVNKSELGDGASKIKVRARLSNPLPKTQAVKGGMCGGFQISHARSGAFSRPGRGFGRGRQPFNNRGNFNWSRSFYRGGHSQIGRMGFQDDHDFSMHPDFRQRQFGPQGAVRGGHYAGSRGAAFAGPSRPYHDRAWYGIPDGGPIEPIPPRRPYSPGGQFDMPSMGRHFDDPYLYDDNMHGMKRPFYMTDPEPDYMGPNRLRPRLDYADPPIFHGTHHHDSFGAGSRQYPPDYYGSDYGRGSYLSYYGGDGSHGHGYYY* | 885 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 195 | 301 | - | - | |
Gso2g0425 | 884 | SMART | rrm1_1 | 390 | 463 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | SMART | rrm1_1 | 568 | 643 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | SMART | rrm1_1 | 470 | 550 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 469 | 554 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 195 | 372 | - | - | |
Gso2g0425 | 884 | CDD | RRM_SF | 569 | 643 | - | - | |
Gso2g0425 | 884 | Gene3D | - | 337 | 463 | IPR012677 | - | |
Gso2g0425 | 884 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 567 | 647 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 391 | 459 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 569 | 635 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 471 | 535 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 109 | 126 | - | - | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 350 | 366 | - | - | |
Gso2g0425 | 884 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 389 | 467 | IPR000504 | GO:0003723 | |
Gso2g0425 | 884 | SUPERFAMILY | RNA-binding domain, RBD | 390 | 534 | IPR035979 | GO:0003676 | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 1 | 146 | - | - | |
Gso2g0425 | 884 | SUPERFAMILY | RNA-binding domain, RBD | 559 | 663 | IPR035979 | GO:0003676 | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 25 | 70 | - | - | |
Gso2g0425 | 884 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 268 | 877 | - | - | |
Gso2g0425 | 884 | Gene3D | - | 556 | 710 | IPR012677 | - | |
Gso2g0425 | 884 | MobiDBLite | consensus disorder prediction | 94 | 108 | - | - | |
Gso2g0425 | 884 | PANTHER | NUCLEOLIN-LIKE ISOFORM X1 | 268 | 877 | - | - | |
Gso2g0425 | 884 | CDD | RRM_SF | 471 | 534 | - | - | |
Gso2g0425 | 884 | CDD | RRM_SF | 391 | 459 | - | - | |
Gso2g0425 | 884 | Gene3D | - | 468 | 553 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso2g0425 | Gso-Chr2 | 4445081 | 4451999 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso2g0425 | 391 | 635 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.016 | 1.33e-15 | 79.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso2g0425 | - | - | gmx:100784338 | 1479.92 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso2g0425 | 2 | 4445081 | 4451999 | Gso16g1048 | 16 | 28534384 | 28541813 | GST |