Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0424 ATGAAGCGAGCGAGGAAATCCAACAGGGTTTCGTGGGCTACTGGAGAGAACCTGTGTCAGGTAAAATTGTTCTTGTCTGACGATTACCCCTCAATAGTTGGTCAGAAATCACAAGATCATCTTCAAGCAAAGACATCATCAATGTTACATTCTAGTATTAACGAACCTAATGATTTGCCCCCCGGGTTTGAAAGCAGTCATTTCCTAAACCAACCCAAGGTTGAATTATCCAACATTCCCCTGATAAAATGGGAATGCCCTCCTCTGGTTGTTGTCAGATCTCAATGGCGTGTTGCAGCAGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAATGAGGGTGCTTGAAGCACTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGAAGAGGAAGATTATGATGATGGCATTACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTATGGATATTCTGCCTGAATTGGCAGTAGCACTGAAGCCTTCCCCCAATGTGCAGTCGCAGAACTCTCCGCAATATATATCTGCAAAAACCTCCATTAGTTCAGCCTCTAATGCCTCTCCTGCTGTTTCCCATGATCCTTGTGTAAGGCCATTGGCTGAAGCTGATTTAGCAGCAGCCTCTTCAGTTGTTGCAACCATTATAAGGAGTAATGAGCAAGGAACCCTGATTGATATGGATTTACTGGGTAAAATATTTACTGATCCAAAAATACTTGAGCAGTTGATTAATGAACACAGAACTGCAGCTACCACCACAAGTGCGTCCTCAAAGACTGTGGATATACCCACTTCTGGGCAGAAGCCTGCTATTCCATCAGTTCTGTTGTCTACATCTACACCTGATGTGACAGCTTCTGGGACTACACCCACAAGTGCAGTGAGTTCATTACCTTCTGGGTTTTGGTTGAAGCCTTCAAATCCATCAGTTTCATTATTGAATCCTACACCTTGTAAGACACCCACTCTGTCAGTGCCCGCAATTCCATCATTTTCACTATTGTCTTCTACACATGATCAGCCTGTGACTGCATCAGTTCCATTGTCCAGGCCCGTATCTGGTAAGCCAGTAACTCCCTCAGTTTCATTGCTTACACATACTCCTGCGCTTGATATGCACAGGCCTGTCAGCAAAAATTTTCACGTGTCAAGTGGAATGCCCCCTGCTTTAAATAGCCAGTCTCAGCAAGAGACAGCTCTGGCATCTGGGCCAAAGCGAGCCGCATCATTGGCGTCCATACCTTATAGCCAATTAAGCTCTGGTCCATTGCCTTCTGCAGCCGGGAACTTGCGCGCAACTATAAATCAGGCGCAATCTGCTGCAACCACAATGCCTTATAAACTAAGTACGTGTTCATCAGCTTTTGCAGTAAAGGATGCCAACTACTATAAAAACCTAATCAGGCAACATGGTGCAGACAAGCAAGATATCCAGGACTCACACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAATATTAAACAAGGAGAAGTGAAACACAAAATCCAGAAACCATGCATATATTTTAAAAGCCCAAGGGGGTGCCGAAATGGTTCCAATTGCCCCTATCAGCATGATGTTTCAGATCAGTGGGGAGCTGGTAACGTCTTAGGGGCACAGAGTGCTAAAAGATTGAAACTGGGAGGCGAGAACTAA 1710 0.4462 MKRARKSNRVSWATGENLCQVKLFLSDDYPSIVGQKSQDHLQAKTSSMLHSSINEPNDLPPGFESSHFLNQPKVELSNIPLIKWECPPLVVVRSQWRVAAGEESREKENQKLREMRVLEALYPRLSAIPPSPSVSLDVEEEDYDDGITPLIPIIPIEEEESMDILPELAVALKPSPNVQSQNSPQYISAKTSISSASNASPAVSHDPCVRPLAEADLAAASSVVATIIRSNEQGTLIDMDLLGKIFTDPKILEQLINEHRTAATTTSASSKTVDIPTSGQKPAIPSVLLSTSTPDVTASGTTPTSAVSSLPSGFWLKPSNPSVSLLNPTPCKTPTLSVPAIPSFSLLSSTHDQPVTASVPLSRPVSGKPVTPSVSLLTHTPALDMHRPVSKNFHVSSGMPPALNSQSQQETALASGPKRAASLASIPYSQLSSGPLPSAAGNLRATINQAQSAATTMPYKLSTCSSAFAVKDANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKPVHNIKQGEVKHKIQKPCIYFKSPRGCRNGSNCPYQHDVSDQWGAGNVLGAQSAKRLKLGGEN* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0424 569 MobiDBLite consensus disorder prediction 397 415 - -
Gso2g0424 569 MobiDBLite consensus disorder prediction 43 66 - -
Gso2g0424 569 MobiDBLite consensus disorder prediction 354 373 - -
Gso2g0424 569 MobiDBLite consensus disorder prediction 267 311 - -
Gso2g0424 569 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 565 - -
Gso2g0424 569 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 565 - -
Gso2g0424 569 MobiDBLite consensus disorder prediction 391 418 - -
Gso2g0424 569 ProSiteProfiles Zinc finger C3H1-type profile. 519 546 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0424 Gso-Chr2 4433955 4442287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0424 82 152 Homeobox Transcription Factor Family AT4G02560 43.662 7.25e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g0424 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0424 - - gmx:102661587 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g0641 11 5719579 5722644 Gso2g0424 2 4433955 4442287 PCT
Gso2g0424 2 4433955 4442287 Gso11g0640 11 5711347 5714978 PCT