Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0423 ATGCGCTGTCATCAAAACTATAAAAGATTAACCTTTCTCTTTGCGAATCCTATTGATTCAACGTCGATTGTGAATCTGAGTGTTTTTACTTTGATTCGATTCGATATGAAGCGAGCGAGGAAATCCAACAGGGTTTCGTGGGCTACTGGAGATAATCTGTGTCAGGTAAAATTGTTCTTGTCTGAGGATTTTCCCTCAATAGTTGGTCAGAAATCGCAAGATCATCTTCAAGCAAAGACATCATCAATGTTACATTCTAGTATTAACGAACCTAATGATTTGCCCCCCGGGTTTGAAAGCAGTCATTTCCTAAACCAACCAAAGGTTGAATTCTCCAACATTCCCCAGATAAAATGGGAATGCCCTCCGGTGGTTGTTGTCAGATCTCAATGGCGTGTTGCAGCAGGTGAAGAAAGTAGGGAGAAAGAGAATCAGAAACTGAGAGAAATGAGGGTGCTTGAAGCACTTTATCCCCGTCTTTCTGCCATTCCTCCTAGCCCTTCTGTCTCTTTGGATGTAGAAGAGGAAGATTATGATGATGGCAGAACTCCTCTCATCCCTATCATTCCCATTGAAGAGGAAGAATCTACGGATATTCTGCCTGAATTGGCAGTAGCACTGAAGCCTTCCCCCAATGTGCAGTCGCAGAACTCTCAGCAATATATATCAGCGAAAACTTCCATTAGTTCAGCCTCTAATGCTGCACATGCCGTTTCCTTGGATCCTTGTATAAGGCCCATGGCTGGGGTATCTTCTGGTATGGAAGCTGATTTAGCAGCAGCCTCTTCAGTTGTTGCAACCATTATAAGGAGTAATGAGCAAGGAACCCTGATTGATATGGATTTACTGGGTAAAATATTTACTGATCCAAAAATACTTGAGCAGTTGATTAATGAACATGGAACTGCAGCTACCACAGCAAGTGCTTCCTCAAATACTGTGGATATACCCACTTCTGGGTTGAAGCCTGCTATTCCATCAGTTCTGGTGTCTACACCTACACCTGATGTGACAGCTTCATGGACTACACCCACAAGTGCAGTGGGTTCATTACCTTCTGGGTTTGGGTTGAAGCCTTCAAATCCATCAGTTTCTTTATTGAATCCTACACCCACTCTGTCAGTGCCTGCAATTCCATCAGTTTCACTATTGTCTTCTTCACATGATAAGCCAGTGACTGCATCGGTTCCATTGTCCAGGCCCGTTCCTGGTATGCCAGTAACTCCCTCAGTTTCAATGCTTACTCATCATACACCTGCACCTGATATGCACAGGCCCGTCAGCAAAAATTTTCACCATGTGTCGAGTGGAATGCCCCCTGCTTTAAATAACCAGTCTCAGCAAGAGACAGCTATGGCATCCGGGCCAAAGCGAGCCAACTACTATAAAAACCTCATCAGGCAACATGGTGCAGACAAGCAAGACATCCAGGACTCGCACATAGGTATCCGTCATAGTAACTTCCAAGATATGAAACCGGTACATAACATTAAACAAAGAGAAGTGAAACCCAAAATCCTGAAACCATGCATATATTTTAAAAGCCCAAGGGGGTGCCGAAATGGTTCCAATTGCTCCTACCAGCATGATGTTTCAGCTCAGGAGGGAGCTGGTAACGTCTTAAGGGCACAGAGTGCAAAAAGATTGAAATTGGGAGGGGAGAACTAA 1668 0.4406 MRCHQNYKRLTFLFANPIDSTSIVNLSVFTLIRFDMKRARKSNRVSWATGDNLCQVKLFLSEDFPSIVGQKSQDHLQAKTSSMLHSSINEPNDLPPGFESSHFLNQPKVEFSNIPQIKWECPPVVVVRSQWRVAAGEESREKENQKLREMRVLEALYPRLSAIPPSPSVSLDVEEEDYDDGRTPLIPIIPIEEEESTDILPELAVALKPSPNVQSQNSQQYISAKTSISSASNAAHAVSLDPCIRPMAGVSSGMEADLAAASSVVATIIRSNEQGTLIDMDLLGKIFTDPKILEQLINEHGTAATTASASSNTVDIPTSGLKPAIPSVLVSTPTPDVTASWTTPTSAVGSLPSGFGLKPSNPSVSLLNPTPTLSVPAIPSVSLLSSSHDKPVTASVPLSRPVPGMPVTPSVSMLTHHTPAPDMHRPVSKNFHHVSSGMPPALNNQSQQETAMASGPKRANYYKNLIRQHGADKQDIQDSHIGIRHSNFQDMKPVHNIKQREVKPKILKPCIYFKSPRGCRNGSNCSYQHDVSAQEGAGNVLRAQSAKRLKLGGEN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0423 555 ProSiteProfiles Zinc finger C3H1-type profile. 504 532 IPR000571 GO:0046872
Gso2g0423 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 36 551 - -
Gso2g0423 555 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 36 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0423 Gso-Chr2 4423614 4430844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0423 116 187 Homeobox Transcription Factor Family AT4G02560 44.444 5.13e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso2g0423 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0423 - - gmx:100783272 1011.91