Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0412 ATGGGAGCCTGCTTTTCCGCCACCAAAGTAAGCGGCTCGAACGGCAATGGCGTCAACGTCAACAAAAAGCGCAGGGGGACCACGAAGAAGCCGAAATCAGAGACGGCGAAGGCGAATCCCCAACGGCACAAGGCGGCAAGTTCGCGCCACGTGCCGTGCGGGAAGCGCACCGATTTCGGTTACAAGAAGGATTTCAATCAGCGTTACTCGCTCGGAAAATTGCTCGGACACGGCCAATTTGGTTACACTTACGTTGGAATTGACAAAGCCAATGGCGATCGCGTCGCCGTTAAGAGGCTTGAGAAGAGTAAGATGGTTCTGCCTATTGCCGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGCACTTACCGGCCATGAGAATGTGGTTCAGTTCTATAATGCTTTTGAAGATGATTCTTATGTGTTCATAGTTATGGAGTTGTGCGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACGGTCGTTATACTGAAAAAGACTCAGCGGTGGTTGTAAGGCAGATGCTCAAGGTTGCAGCTGAGTGTCATTTACATGGTTTGGTACACCGGGATATGAAACCAGAGAATTTTCTTTTTAAATCAATCAAAGAAGATTCACCTTTAAAGGCCACAGATTTTGGTTTGTCAGATTTCATAAAACCTGGAAAAAAGTTTCATGATATTGTTGGCAGTGCTTACTATGTTGCACCTGAAGTGTTAAAACGCAAGTCAGGTCCTCAATCAGATGTGTGGAGTATTGGTGTTATTACATACATATTGTTGTGTGGAAGACGCCCATTTTGGGATAAGACTGAGGATGGTATCTTCAAGGAGGTCTTACGTAAGAAGCCTGATTTTCATCGGAAACCATGGCCAACTATTAGTAATGCCGCAAAAGATTTTTTGAAAAGATTACTAGTAAAGGATCCTCGGGCGAGATTAACTGCGGCTCAAGGTTTATCACATCCATGGGTTAGAGAAGGAGGTGAAGCATTGGAGATTCCTATTGATATATCTGTCCTCAGCAACATGCGGCAGTTTGTGAAATATAGTCGAATGAAACAATTTGCACTGAGGGCTCTTGCCAAAGATCTTCCTTGGAAATTGAAAGAATCACGTGTACTAGAGATATTGCAAGCGATAGACAGCAACACTGATGGCCTAGTGGATTTCCGGGAGTTTGTAGCGGCTACATTACACGTGCATCAACTGGAGGAAGACTCTGACAAGTGGCAGCAACTGTCACAGGCTGCTTTTGAGAAATTTGACATAGATAAAGATGGCTATATTACTACGGAAGAACTTAGAATGCATACATGCTTGAGAGGCTCCGTTGATCCTTTGCTAGAGGAAGCTGATATTGACAAAGATGGAAAAATAAGCCTACCAGAGTTTCGTAGACTCCTAAGAACTGCAAGCATGAGTTCTAAAAATGTTTCAAGCCCATCTGTTCATCGGCGGCGGAGATTCTAG 1485 0.4451 MGACFSATKVSGSNGNGVNVNKKRRGTTKKPKSETAKANPQRHKAASSRHVPCGKRTDFGYKKDFNQRYSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKALTGHENVVQFYNAFEDDSYVFIVMELCEGGELLDRILAKKDGRYTEKDSAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSIKEDSPLKATDFGLSDFIKPGKKFHDIVGSAYYVAPEVLKRKSGPQSDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRKKPDFHRKPWPTISNAAKDFLKRLLVKDPRARLTAAQGLSHPWVREGGEALEIPIDISVLSNMRQFVKYSRMKQFALRALAKDLPWKLKESRVLEILQAIDSNTDGLVDFREFVAATLHVHQLEEDSDKWQQLSQAAFEKFDIDKDGYITTEELRMHTCLRGSVDPLLEEADIDKDGKISLPEFRRLLRTASMSSKNVSSPSVHRRRRF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0412 494 Gene3D Transferase(Phosphotransferase) domain 1 155 335 - -
Gso2g0412 494 Pfam Protein kinase domain 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0412 494 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Gso2g0412 494 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Gso2g0412 494 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gso2g0412 494 SUPERFAMILY Protein kinase-like (PK-like) 66 348 IPR011009 -
Gso2g0412 494 MobiDBLite consensus disorder prediction 1 55 - -
Gso2g0412 494 CDD STKc_CAMK 68 328 - -
Gso2g0412 494 Pfam EF-hand domain pair 421 473 IPR002048 GO:0005509
Gso2g0412 494 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Gso2g0412 494 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0412 494 CDD EFh 420 474 IPR002048 GO:0005509
Gso2g0412 494 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 364 483 - -
Gso2g0412 494 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 22 366 - -
Gso2g0412 494 MobiDBLite consensus disorder prediction 7 22 - -
Gso2g0412 494 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Gso2g0412 494 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Gso2g0412 494 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso2g0412 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 366 - -
Gso2g0412 494 PANTHER SERINE/THREONINE-PROTEIN KINASE 364 483 - -
Gso2g0412 494 SMART efh_1 418 444 IPR002048 GO:0005509
Gso2g0412 494 SMART efh_1 377 405 IPR002048 GO:0005509
Gso2g0412 494 SMART efh_1 448 476 IPR002048 GO:0005509
Gso2g0412 494 Gene3D - 406 487 - -
Gso2g0412 494 Pfam EF-hand domain pair 367 402 IPR002048 GO:0005509
Gso2g0412 494 SUPERFAMILY EF-hand 356 475 IPR011992 -
Gso2g0412 494 Gene3D - 347 404 - -
Gso2g0412 494 ProSiteProfiles EF-hand calcium-binding domain profile. 452 479 IPR002048 GO:0005509
Gso2g0412 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Gso2g0412 494 Gene3D Phosphorylase Kinase; domain 1 62 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0412 Gso-Chr2 4350475 4357005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0412 1 486 EF-hand Containing Proteins AT2G17890 69.039 0.0 759
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso2g0412 Pkinase 7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0412 K13412 - gmx:100781666 957.977