Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0404 ATGGCGGAAGAGCGATTCACGGGCGTGGTGCAGTGGTTCAACAATGGCAAGGGCTTCGGCTTCATCAAGCCCGACGACGGCGGCGAGGATCTCTTCGTTCACCAGTCCTCCATCAGATCCGACGGCTACCGCACCCTCCTCGAGGGCGACCGCGTCGAGTTCGCCATCGCCACCGGCGACAACGACAAGACCAAGGCCGTCGACGTCACCGGCGTCGACGGCGCCCCTCTCCAGCCCCGCGCAGCCGCCGGCAACAACAACCGCGCCGCCGGCTCTGGCTTCGGTTTCGGCGCCAGGCGCAATGGCGGAGGCGGCGCCGCGTGCTACCAGTGTGGCGAGTTTGGACACCTCGCCAGGGATTGCAACAGGAGCAGTAATTCTGGTGGCGGCGGAGGCGGCAGCGGCGGTGGTTGTTTCAATTGCGGGGGGTTCGGCCACCTCGCGAGAGATTGCGTGCGCGGAGGCGGCGGCAGTGTAGGCATTGGAGGTGGTGGCGGAGGCGGATCTTGCTTTAGGTGTGGCGGATTTGGACACATGGCGAGGGATTGCGCCACCGGGAAGGGCAACATTGGCGGTGGAGGAAGCGGTGGAGGTTGTTTTCGGTGTGGGGAGGTTGGTCATTTGGCTAGGGATTGCGGCATGGAAGGAGGGAGATTTGGTGGTGGTGGCGGAAGCGGCGGCGGCGGTGGAAAAAGCACTTGCTTTAATTGTGGGAAGCCAGGGCATTTTGCGAGGGAATGTGTTGAAGCTTCAGGTTGA 759 0.6364 MAEERFTGVVQWFNNGKGFGFIKPDDGGEDLFVHQSSIRSDGYRTLLEGDRVEFAIATGDNDKTKAVDVTGVDGAPLQPRAAAGNNNRAAGSGFGFGARRNGGGGAACYQCGEFGHLARDCNRSSNSGGGGGGSGGGCFNCGGFGHLARDCVRGGGGSVGIGGGGGGGSCFRCGGFGHMARDCATGKGNIGGGGSGGGCFRCGEVGHLARDCGMEGGRFGGGGGSGGGGGKSTCFNCGKPGHFARECVEASG* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0404 252 PANTHER COLD SHOCK DOMAIN PROTEIN 2 101 133 - -
Gso2g0404 252 PANTHER COLD SHOCK DOMAIN PROTEIN 2 124 251 - -
Gso2g0404 252 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 100 - -
Gso2g0404 252 SMART c2hcfinal6 233 249 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SMART c2hcfinal6 107 123 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SMART c2hcfinal6 198 214 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SUPERFAMILY Retrovirus zinc finger-like domains 216 248 IPR036875 GO:0003676|GO:0008270
Gso2g0404 252 SUPERFAMILY Nucleic acid-binding proteins 4 74 IPR012340 -
Gso2g0404 252 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Gso2g0404 252 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam Zinc knuckle 233 247 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam Zinc knuckle 107 121 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam Zinc knuckle 198 212 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Gso2g0404 252 ProSiteProfiles Zinc finger CCHC-type profile. 108 121 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 ProSiteProfiles Zinc finger CCHC-type profile. 170 183 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Gso2g0404 252 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Gso2g0404 252 SUPERFAMILY Retrovirus zinc finger-like domains 98 153 IPR036875 GO:0003676|GO:0008270
Gso2g0404 252 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Gso2g0404 252 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Gso2g0404 252 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Gso2g0404 252 PANTHER COLD SHOCK PROTEIN 2 124 251 - -
Gso2g0404 252 PANTHER COLD SHOCK PROTEIN 2 1 100 - -
Gso2g0404 252 PANTHER COLD SHOCK PROTEIN 2 101 133 - -
Gso2g0404 252 Gene3D - 132 193 - -
Gso2g0404 252 ProSiteProfiles Zinc finger CCHC-type profile. 234 247 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 Gene3D - 1 82 IPR012340 -
Gso2g0404 252 Gene3D - 194 218 - -
Gso2g0404 252 Gene3D - 228 252 - -
Gso2g0404 252 Gene3D - 98 130 - -
Gso2g0404 252 SUPERFAMILY Retrovirus zinc finger-like domains 160 214 IPR036875 GO:0003676|GO:0008270
Gso2g0404 252 ProSiteProfiles Zinc finger CCHC-type profile. 199 212 IPR001878 GO:0003676|GO:0008270
Gso2g0404 252 SMART csp_8 7 72 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0404 Gso-Chr2 4296295 4297512 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gso2g0404 CSD 1.4e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0404 K09250 - gmx:100806783 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0404 2 4296295 4297512 Gso16g1014 16 27892406 27893546 GST