Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso2g0395 | ATGGGTATCAAGTGCATACACGTTTTTGATAGATTATATAGTTTTTTCACTTGTTCGAAGAAAAGCACCATGCCAAGTGGCAGAAGAATTTTCCACAGGGATGTGGAAAAGGAAGAATTTCAGTATGCTAGCACTCAATGTCTCTCATCTTACTACAGTGTCTTTGTGGTTCGTCTAGCAATCATGGCCATGCTAGCAATCTTGATTGGTCTTCTCACTTTTCTGACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCTTATGATCTGCGTTACGAACTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTTTGAATTCTACTGCTGAAATTACAACTGCTCAGGTTAAGCTGTCTCAGTATGTGATCAGAAAACACACCAACTTTGCCACTCAAGCAGACCAAGTTGAGATGTATGAGGCGATGAGGGCTGTAACGTGGGCGCTGTTTGCTGGTAAAAAGGCTCTCAATTCAATAACTGTCAAATACAAGAATGGATTTGTCCAAGCATTCCATAGAGACCTGAAGGATAATAATACCTTTTACATTTATTCTGATCTTGCAAATTACTCCATGGCTGCCAGTGGCTACAATGAGATCAATTCACGTTCGTCGCGTGAAGCTTGGAACGATAAAGACATTCATGGTCACAAGCCTGCAATTTGGTATCGCGAACCACTTGATCCAATCAGTGGTGAGAAGATTGGAAAAGTAAGGCCAATTGCACCAGAAGACTCGATCAATATAGCCGGCCTCTCCCAAGTACCTGACGGTGTAGCTTCGTGGCACGTTTCTGTTAGCAAGTTTACAGATTCGCCGTTGCTTTCTGCAGCATTGCCAGTTTGGGATTCTTCTAATAAAAGCATTGAGGCAGTTGTGGGTGTCACAACTGCACTTTACAGTGTGGGGCAGCTCATGAAAGAGCTAGTTGAGAAGCATAGTGGTCACATGTATTTGACCTCCCAAGAGGGTTACTTACTTGCAACTTCCACAAATGCTCCTCTACTATCAAATTCTACCAAGCCTCCTAAGCTTAAGATGGCTGTTGAGTGTGAAAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTGCAGAAAACCTATGGGAATAATTTCCCTCAAAGTCATGAGCTTCATGTAGAGAATGTCAGGCTAGGCCGCCAACAATATTACATTGACTCATTCTTCCTGAACTTAAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCTAGAAAGCATATTATGGGGCAGGCAGATGAAAGAGCCTTCAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATACTGACTAATGGAGTATCAAAGGAAATGAAACTTAGAGCAGAACTGATCAGTCACCTGGAAGCAAGAAGGAAGGCAGAGGCATCAAGCAACTATAAAAGTCAATTTCTTGCAAATATGAGTCATGAATTGAGGACACCAATGGCAGCAGTAATCGGGTTACTTGACATTCTTATATCTGATGACCGTCTCACAAATGAGCAATGTGCAACAGTTACTCAAATAAGAAAATGCTCAACTGCCCTGCTTCGTCTACTTAATAACATCTTAGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGACTTGGGGCGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAATGTAGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGCTAGTTCGGGGTGATTCTGCTAGGGTAGTTCAAATTTTTGCAAATTTGATCAACAACTCAATTAAGTTTACTCTATCTGGTCATATTGTTCTGAGAGGATGGTGTGAAAACCCAAATTCTTGCAGTGACAATACAAATTTTCCTCTAGAACAAAAGAAATTACGGTGCTCGCAGAAGACCAGAGCAAAGCAACATGAAAATCATGCAAAAAGAACTTCTAATAGAGATAACAAAATGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAGTAAATGGGAATCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATCGTCCGAACCTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTGTCAAAAAGGAGGGCTCAGGAACACTGATGAGATTATGCTTGCGTCTCAGTGCACCTGTGGATGCCACAGAACAACATTGTCAAGTAGATTTTGCTAACAAGGGCTTGGTGGTGCTTCTTGCACTACACGGCAACATGGGTCGATCAGCTACATCTAAGTGGTTACAGAAAAACGGGGTGGTCACTATGGAAGCAGCCGAATGGAATGGACTAACACAAATTCTTAGGGTACTCTTTCATGCAAGAAGTTCAGCTCATAATAATGGCTTTGATGCAAATTATTCAGTGCATGACAATTTAAAGTCAAGACTACTGAGCATACAGGAATTGAGGAACCCAGTTTTTGTCATTGCTGTTGACATTGGACTACTAGACTTAAGCACAGATATATGGAAGGAACAGCTCAATTTCCTTCACAAATACTTTGGGAGAGCAAAATTCGTGTGGATACTAAACCATGACTCCTCCAATACCATGAAGATGGACCTTTGCAGGAAAGGACATACACTGACAGTGAATAAACCCCTTTACAAAACAAAAATGATTCATATTTTGGAATCCATCATAAAGGACAGAAATGAAGAGCTACAAAAGAAAAATATGACTACTCTAAGAGCTACAGTGAAAGAGGGCAATTTGCATGAGAGTCTTGAGATTGATTATACTCAATGTGATGTTGCAAGCTCAGATGGTTCTGACATATCCGAAACGGGTGGTTCTAATCCTGTTAGTGCCAGAGGAGATAAACAAAGAGAGAAGGTAGTGAGATCCGATCCATCATCACAACACCAGATAAATAACTTAGTTGGATTAACAAATGAATGCATGGAAGATGATAATCATAGGAAGGAAGAGTTATGTCAGAGCAGCCTTAACTCTAACGATGTCACTGCTAACGCCTCACCAAAATCATCCTCCACTAAACAAGCATCCTTTGCAACAGGAGCTCGAGATGGAGATTCTGAATATGGTGAAACACGTAAGGCCAGTAGCTCAAGTAGAGCAGTGAGTGGAAAGAAATCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACCATAATGCTCGAAAAAATGGGAGCCATTGTTGTAGCTGTAGGTGATGGACGACAGGCTGTGGATGCTCTGAATGGCATGTCTGGTGTTGAAGATTGTAGAAGGGAGACTCTCCTTAAGGAAAGAAACACAAGATCATCTCAAACTGAGATTCTCAGTTGCCCTCCATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTATGAGGCAACAAAAGCAATCCGGAAATCAGAAGAGGGAACTGGCTTGCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAGTGCCTAGAGGTGGGCATGGATGCCTATTTAACAAAGCCAATTGACTTCAAACTGATGGAGTCCACCATTCTTTCACTCACGAGAGGGACATCCTAA | 3681 | 0.4148 | MGIKCIHVFDRLYSFFTCSKKSTMPSGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMAMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSQYVIRKHTNFATQADQVEMYEAMRAVTWALFAGKKALNSITVKYKNGFVQAFHRDLKDNNTFYIYSDLANYSMAASGYNEINSRSSREAWNDKDIHGHKPAIWYREPLDPISGEKIGKVRPIAPEDSINIAGLSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIEAVVGVTTALYSVGQLMKELVEKHSGHMYLTSQEGYLLATSTNAPLLSNSTKPPKLKMAVECENEVIREGAQWLQKTYGNNFPQSHELHVENVRLGRQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMKLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDRLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIVLRGWCENPNSCSDNTNFPLEQKKLRCSQKTRAKQHENHAKRTSNRDNKMILWFEVDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKEGSGTLMRLCLRLSAPVDATEQHCQVDFANKGLVVLLALHGNMGRSATSKWLQKNGVVTMEAAEWNGLTQILRVLFHARSSAHNNGFDANYSVHDNLKSRLLSIQELRNPVFVIAVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWILNHDSSNTMKMDLCRKGHTLTVNKPLYKTKMIHILESIIKDRNEELQKKNMTTLRATVKEGNLHESLEIDYTQCDVASSDGSDISETGGSNPVSARGDKQREKVVRSDPSSQHQINNLVGLTNECMEDDNHRKEELCQSSLNSNDVTANASPKSSSTKQASFATGARDGDSEYGETRKASSSSRAVSGKKSLEGLRILLAEDTPVIQRVATIMLEKMGAIVVAVGDGRQAVDALNGMSGVEDCRRETLLKERNTRSSQTEILSCPPYDLILMDCQMPKMDGYEATKAIRKSEEGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRGTS* | 1227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso2g0395 | 1226 | CDD | HisKA | 484 | 545 | IPR003661 | GO:0000155|GO:0007165 | |
Gso2g0395 | 1226 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 538 | 745 | IPR036890 | - | |
Gso2g0395 | 1226 | CDD | REC_hyHK_CKI1_RcsC-like | 1077 | 1218 | - | - | |
Gso2g0395 | 1226 | Pfam | Response regulator receiver domain | 1145 | 1215 | IPR001789 | GO:0000160 | |
Gso2g0395 | 1226 | PRINTS | Bacterial sensor protein C-terminal signature | 673 | 687 | IPR004358 | GO:0016310|GO:0016772 | |
Gso2g0395 | 1226 | PRINTS | Bacterial sensor protein C-terminal signature | 691 | 701 | IPR004358 | GO:0016310|GO:0016772 | |
Gso2g0395 | 1226 | PRINTS | Bacterial sensor protein C-terminal signature | 708 | 726 | IPR004358 | GO:0016310|GO:0016772 | |
Gso2g0395 | 1226 | PRINTS | Bacterial sensor protein C-terminal signature | 732 | 745 | IPR004358 | GO:0016310|GO:0016772 | |
Gso2g0395 | 1226 | Gene3D | - | 471 | 550 | - | - | |
Gso2g0395 | 1226 | Pfam | His Kinase A (phospho-acceptor) domain | 484 | 549 | IPR003661 | GO:0000155|GO:0007165 | |
Gso2g0395 | 1226 | MobiDBLite | consensus disorder prediction | 1020 | 1044 | - | - | |
Gso2g0395 | 1226 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 596 | 746 | IPR003594 | - | |
Gso2g0395 | 1226 | SMART | HisKA_10 | 483 | 549 | IPR003661 | GO:0000155|GO:0007165 | |
Gso2g0395 | 1226 | SMART | HKATPase_4 | 596 | 748 | IPR003594 | - | |
Gso2g0395 | 1226 | SUPERFAMILY | CheY-like | 1073 | 1222 | IPR011006 | - | |
Gso2g0395 | 1226 | MobiDBLite | consensus disorder prediction | 958 | 999 | - | - | |
Gso2g0395 | 1226 | MobiDBLite | consensus disorder prediction | 958 | 974 | - | - | |
Gso2g0395 | 1226 | Gene3D | - | 551 | 749 | IPR036890 | - | |
Gso2g0395 | 1226 | SUPERFAMILY | Homodimeric domain of signal transducing histidine kinase | 470 | 550 | IPR036097 | GO:0000155|GO:0007165 | |
Gso2g0395 | 1226 | MobiDBLite | consensus disorder prediction | 1020 | 1066 | - | - | |
Gso2g0395 | 1226 | ProSiteProfiles | Histidine kinase domain profile. | 490 | 748 | IPR005467 | - | |
Gso2g0395 | 1226 | PANTHER | OSMOSENSOR HISTIDINE KINASE | 1 | 1223 | - | - | |
Gso2g0395 | 1226 | PANTHER | TWO-COMPONENT HISTIDINE KINASE | 1 | 1223 | - | - | |
Gso2g0395 | 1226 | ProSiteProfiles | Response regulatory domain profile. | 1076 | 1222 | IPR001789 | GO:0000160 | |
Gso2g0395 | 1226 | Gene3D | - | 1053 | 1220 | - | - | |
Gso2g0395 | 1226 | SMART | REC_2 | 1075 | 1218 | IPR001789 | GO:0000160 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso2g0395 | Gso-Chr2 | 4199202 | 4206326 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso2g0395 | 8 | 1226 | Histidine Kinase Gene Family | AT2G17820 | 63.415 | 0.0 | 1538 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | Others | Gso2g0395 | HATPase_c | 6.7e-23 | CL0025 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso2g0395 | - | - | gmx:100776856 | 2406.33 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso11g0661 | 11 | 5940522 | 5948315 | Gso2g0395 | 2 | 4199202 | 4206326 | PCT | |
Gso2g0395 | 2 | 4199202 | 4206326 | Gso11g0661 | 11 | 5940522 | 5948315 | PCT |