LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso2g0370	ATGAGTTCTAGTTCTTATGATATCCCTTTGCCATCGTCCCTTTTGCCAAGCGAGGCATCGCCGGAGTGGAACAACAAAGCAGACAACGCGTGGCAGCTCACGGCGGCAACCCTAGTGGGCCTCCAGAGCGTTCCCGGGCTCGTGATCCTATATGGCAGCATGGTAAAGCGCAAATGGGCCGTGAACTCGGCGTTCATGGCCCTGTACGCCTTCGCGTGTGTGCTCATTTGTTGGGTTTCATGGGCACACCGCATGGCGTTCGGGGCCAGGCTTTTACCCTTTGTGGGAGCGCCCAACCATGCCTTGGCCGAGAAGTTTCTCCTCGCAAAGTCAACAATTGGGTATTTTCCAATGGCTGACTTTGTGTTCTACCAGTTTGCTTTTGCCGCAATTACTCTTGTGTTGCTTGCAGGGTCCTTGCTTGGGAGAATGAACTTCTATGCGTGGATGATGTTTGTCCCTTTGTGGCTTACGTTGTCTTATACCGTTGGTGCCTTCAGCATATGGGACGATGATGGGTTCCTTCAGGGAAAAATAATTGACTATGCTGGTGGGTTTGTCATTCATTTGTCTTCTGGCGTTGCGGGTTTCACAGCTGCTTATTGGGTTGGTCCAAGAATTTCACAGGACAGGCAAAACTTTCCACCAAACAACATAATTCACGTGCTTGGAGGTGCAGGGTTTTTGTGGATGGGTTGGACAGGTTTCAATGGTGGAGCTCCATTTCAAGTGGGAGAAATCGCATCCTTGGCCATTTACAATACCCATCTTTGCACTGCCACAAGCCTACTCGTTTGGCTTACGCTTGACATGATTGTATATACCAAGAGCTCAGTCATAGGTGCTGTCCAGGGAATGATCACTGGCCTCGTCTGCATCACACCAGGTGCAGGCTTGGTGGATCCATGGGCAGCAGTATTGATGGGAGCATTGTCTGGTTCCATTCCATGGTACACAATGATGGTGCTACACAAAAAATCCGCATTCTTTCAAAGTGTAGATGACACATTAGGAGTCTTTCACACTCATGCTGTGGCTGGTCTTCTTGGGGGTATCCTTTCTGGCGTGTTTGCCAAACCCGACCTTCTAAGAATAATGTATCAAGATACAAATTATTGCCCCGGCTTATTCTACACCTTTTTTAAGGGGGAAGTGGACCATGGCTTTAGGCAAATTTGGTACCAATTACTTGGAGCAGGTTTTATTATTGTTTGGAATGTTGTTATTACTAGCCTCATTTGTATTCTCATAAGCCGCATTGTGGATCTTAGGATGAAAGAAGAGGATCTTGAGGTTGGTGATGATGCTGCCCATGGGGAAGAAGCATATGCATTGTGGGGTGATGGAGAGAGAATGAGGATCCCTCTTCGTCTTCATATAGGTCCAACAATTCCTTCCTTGTGCCGAAAAAGGTTTTCAATTCCTCTCACTAGGAAAGAAGGAGAATAG	1449	0.4762	MSSSSYDIPLPSSLLPSEASPEWNNKADNAWQLTAATLVGLQSVPGLVILYGSMVKRKWAVNSAFMALYAFACVLICWVSWAHRMAFGARLLPFVGAPNHALAEKFLLAKSTIGYFPMADFVFYQFAFAAITLVLLAGSLLGRMNFYAWMMFVPLWLTLSYTVGAFSIWDDDGFLQGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRISQDRQNFPPNNIIHVLGGAGFLWMGWTGFNGGAPFQVGEIASLAIYNTHLCTATSLLVWLTLDMIVYTKSSVIGAVQGMITGLVCITPGAGLVDPWAAVLMGALSGSIPWYTMMVLHKKSAFFQSVDDTLGVFHTHAVAGLLGGILSGVFAKPDLLRIMYQDTNYCPGLFYTFFKGEVDHGFRQIWYQLLGAGFIIVWNVVITSLICILISRIVDLRMKEEDLEVGDDAAHGEEAYALWGDGERMRIPLRLHIGPTIPSLCRKRFSIPLTRKEGE*	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso2g0370	482	PANTHER	AMMONIUM TRANSPORTER MEP2	7	472	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gso2g0370	482	Gene3D	Ammonium transporter AmtB like domains	14	446	IPR029020	-
	Gso2g0370	482	TIGRFAM	amt: ammonium transporter	28	443	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gso2g0370	482	PRINTS	Rhesus blood group protein signature	125	141	IPR002229	GO:0005887
	Gso2g0370	482	PRINTS	Rhesus blood group protein signature	220	238	IPR002229	GO:0005887
	Gso2g0370	482	PRINTS	Rhesus blood group protein signature	251	273	IPR002229	GO:0005887
	Gso2g0370	482	PRINTS	Rhesus blood group protein signature	344	360	IPR002229	GO:0005887
	Gso2g0370	482	Pfam	Ammonium Transporter Family	30	443	IPR024041	GO:0008519\|GO:0016020\|GO:0072488
	Gso2g0370	482	SUPERFAMILY	Ammonium transporter	23	424	-	-
	Gso2g0370	482	PANTHER	AMMONIUM TRANSPORTER	7	472	-	-
	Gso2g0370	482	ProSitePatterns	Ammonium transporters signature.	181	206	IPR018047	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso2g0370	Gso-Chr2	3998488	4001255	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso2g0370	118	451	Inorganic Solute Cotransporters	AT2G38290	60.479	2.51e-137	398

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso2g0370	K03320		-	gmx:100815876	974.926