Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0352 ATGGGAGGTGACAGTGCCGTTGAGGAATCCGAAGGGGTCAACGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAAGTTTTCCGTTCAGATTGCCGTCGATTCCACCGTCAGTTCCTTCAAAGATGCCGCCGCTTGCAGCTGCGACATCCCTGCCGAGCAACAACGCCTCATATACAAGGGTCGCATCTTGAAGGATGATCAAACCCTCCGAAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTTCGTGGCTCTGCTCTTGCCAATCCAACTGGTGGGACTAATACTAGTAGCACCGATACCAATACCAATACCAATATCCCAACAGATAATGCTAGAGTTGCTGGTGCGAATGAAGGTGAGGGTTTGGGAGGGCTTGGTTTTGGAGCTTCACTATTCCCTGGACTAGGTGTCAATGGGACTGGGGGCAATGGTTTATTTGGCGAGGGATTTCCTGATCTTGAACAGATGCAGCAACCATTTATTTCAAATCCCAATTTAGTGAGAGAAATAATGAATTCACCCACCATGCAGAATCTAATAAATAATCCTGAAATAGTGCGGAATCTTATAATGAATAATCCGCAAATGCAAGAGCTCATGGATCGAAACCCGGAGCTAGCACACATACTTAATGATCCCAGCACTCTTCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAAAATATTCAAGAACCATTTTTGAATGCCACTACAATGGCTGGTAATACAGGAAATAATAATGCAGCAGTTTCAGGGACTCATGGTGGCCATGCAAGGGACCCCTCAACTAATCCCTCCACCACTAGTTCTGAAGCAACTGCTGGTTCTCCTTTACCCAATACTAACCCGCTTCCAAATCCTTGGTCCTCTACGGGAACCGGAGGGGCTCAAAATAACAGCAGAAGGTCGTTGACTACTGGTGTGGATGCCAGACAGCAAGGACCTACTGGCTTAGGAGGGCATGGTCTGCCAGACCTTGAAAGCATGCTGGGTGGTAGTGCTATGCCAGATCCTGCTTTATTGACCCAGCTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCACAAACATTGAATCAGATTCTTGGTGCTAATACTGAGCAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTAATGCAAAATCCAGAATTCCTTCGTTTGTTTTCTTCACCTGAGACATTGCAGCAACTCTTGTCTTTCCAGCAAACTCTTATGTCTCAGCTTGGCCAGCAACAATCAACATGGGAATCTGGTCAAACTGGCGGAGGCACTGGACCAATGAACAACTTGGGATTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATAGATCAAATGAGCCACCGGAGCAGCTGTATGCCTCCCAACTTTCACAGCTTCAAGAGATGGGATTCTTTGATTCACAAGAGAACATTAGAGCCCTTATTGCCACTTCAGGTAATGTTCATGCCGCAGTTGAACGGCTATTGGGGAACTCTGGTCAGTAG 1638 0.467 MGGDSAVEESEGVNVNINVRCSNGSKFSVQIAVDSTVSSFKDAAACSCDIPAEQQRLIYKGRILKDDQTLRSYGLEADHTVHLVRGSALANPTGGTNTSSTDTNTNTNIPTDNARVAGANEGEGLGGLGFGASLFPGLGVNGTGGNGLFGEGFPDLEQMQQPFISNPNLVREIMNSPTMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENIQEPFLNATTMAGNTGNNNAAVSGTHGGHARDPSTNPSTTSSEATAGSPLPNTNPLPNPWSSTGTGGAQNNSRRSLTTGVDARQQGPTGLGGHGLPDLESMLGGSAMPDPALLTQLMQNPAISQMMQSMLSNPQTLNQILGANTEQRGMPDLNSLREVMQNPEFLRLFSSPETLQQLLSFQQTLMSQLGQQQSTWESGQTGGGTGPMNNLGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYASQLSQLQEMGFFDSQENIRALIATSGNVHAAVERLLGNSGQ* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0352 545 Gene3D - 191 249 - -
Gso2g0352 545 PANTHER UBIQUILIN 9 545 - -
Gso2g0352 545 SUPERFAMILY Ubiquitin-like 13 100 IPR029071 -
Gso2g0352 545 SMART uba_6 503 541 IPR015940 -
Gso2g0352 545 Pfam UBA/TS-N domain 503 539 IPR015940 -
Gso2g0352 545 Gene3D - 4 96 - -
Gso2g0352 545 MobiDBLite consensus disorder prediction 90 110 - -
Gso2g0352 545 CDD Ubl_Dsk2p_like 15 87 - -
Gso2g0352 545 SMART ubq_7 15 86 IPR000626 GO:0005515
Gso2g0352 545 Gene3D - 485 545 - -
Gso2g0352 545 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 497 542 IPR015940 -
Gso2g0352 545 MobiDBLite consensus disorder prediction 271 346 - -
Gso2g0352 545 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 545 - -
Gso2g0352 545 MobiDBLite consensus disorder prediction 86 110 - -
Gso2g0352 545 MobiDBLite consensus disorder prediction 271 365 - -
Gso2g0352 545 Pfam Ubiquitin family 17 84 IPR000626 GO:0005515
Gso2g0352 545 SMART CBM 142 183 IPR006636 -
Gso2g0352 545 SMART CBM 196 235 IPR006636 -
Gso2g0352 545 SMART CBM 348 401 IPR006636 -
Gso2g0352 545 SMART CBM 404 439 IPR006636 -
Gso2g0352 545 CDD UBA_PLICs 503 541 - -
Gso2g0352 545 ProSiteProfiles Ubiquitin domain profile. 15 84 IPR000626 GO:0005515
Gso2g0352 545 SUPERFAMILY UBA-like 499 541 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0352 Gso-Chr2 3857489 3864051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0352 15 88 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 32.468 7.57e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0352 K04523 - gmx:100806776 972.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0352 2 3857489 3864051 Gso16g0953 16 26389173 26403352 GST
Gso1g1364 1 50308795 50315277 Gso2g0352 2 3857489 3864051 PCT
Gso11g0718 11 6408056 6414998 Gso2g0352 2 3857489 3864051 PCT
Gso2g0352 2 3857489 3864051 Gso1g1364 1 50308795 50315277 PCT
Gso2g0352 2 3857489 3864051 Gso11g0718 11 6408056 6414998 PCT