Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0347 ATGGTTATGCTTCGACAGGGCATGCAACATGTTCGAAATTACTACAACTCGGAGCCTCAAATGATGAGAAGTAGCTTTTCTCAGCCATTCATCTCTAGAACATACAAAACCAGTTTCTTGAAGCCAAAATCAAAGGCAGAGATCAAAGTATTGGCTGCTAAGAAACACAGTGAAGCAGAAAAGAGACGTAGAATGAGAATCAATGGTCAATATGAAACCCTCCGAAATATCCTCCCCAACATAATCAAAAAGGACAAGGCATCAGTATTGGCAGAGACTATAAAGCAAGTGAAGGAGCTGAAGAAAAAGGTGTCAAAACTGGAACAAGATAGTTCTACTAATCCATCAAAGGATGTTGTTAAGTTTCCTAGTGGGGCAGAAAAGTTGCGTTTGGAAAGATGTAACATTGAGGAGGGCCTAGTGAAGGCCACATTGAGTTGTGAGGATCGTCCAGAATTGATGCAATTAATATCAAAGGCAGTAGGGTCAGCCAACACAAAATTGGTAAAGGCTGAGATAGTGAGTGTGGGAGGGAGAACCAGAAGTGTGTTGTGGGTGCAAGGTCTTGGAAATGATGGTATGGGGATGCTCAAGAGCCATTTGAGGACTGCATTGCACAAGCCGCGTTCTTTTCAGTAA 639 0.4241 MVMLRQGMQHVRNYYNSEPQMMRSSFSQPFISRTYKTSFLKPKSKAEIKVLAAKKHSEAEKRRRMRINGQYETLRNILPNIIKKDKASVLAETIKQVKELKKKVSKLEQDSSTNPSKDVVKFPSGAEKLRLERCNIEEGLVKATLSCEDRPELMQLISKAVGSANTKLVKAEIVSVGGRTRSVLWVQGLGNDGMGMLKSHLRTALHKPRSFQ* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0347 212 CDD ACT_UUR-ACR-like 144 205 - -
Gso2g0347 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 112 IPR036638 GO:0046983
Gso2g0347 212 PANTHER TRANSCRIPTION FACTOR BHLH30 9 209 IPR045847 GO:0003700|GO:0006355
Gso2g0347 212 Coils Coil 90 110 - -
Gso2g0347 212 Pfam Helix-loop-helix DNA-binding domain 55 100 IPR011598 GO:0046983
Gso2g0347 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Gso2g0347 212 PANTHER TRANSCRIPTION FACTOR BHLH131 9 209 - -
Gso2g0347 212 SMART finulus 57 106 IPR011598 GO:0046983
Gso2g0347 212 Gene3D - 52 119 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0347 Gso-Chr2 3785177 3787165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0347 47 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G25710 41.667 3.36e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso2g0347 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0347 - - gmx:102662951 401.749