Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0340 ATGAACGAATACACCTTTGGACAAAGAAAGCACGAAGGCACAGAGAGAGAAACACTGCGAGAGAGAGAGTACGAGACCCCCACCACCCGAATTTCTCAAAACTTGTTAAACAGTATCGAAAAGTTAACGAAATTGAAAGAATTTCGCGAAATGGAATTCGAGGATCAAGAGGAGCAGGAGGAGGAGCTGTGTATGGGTGGCGGCGGAGCGGGTTACGACCCGACCCGGATGAAGGTTCCGGTAGCGGCGGAGCCGGTAAGGAGCACCAACGGCGGCGGCGGAAGGGCGAGGTACAGGGAGTGTTTGAAGAACCACGCCGTTGGGATCGGAGGCCACGCGCTTGACGGTTGCGGCGAGTTTATGGCGGCGGGGATGGAGGGCACCCTTGACGCGTTGAAATGCGCCGCGTGCAGCTGCCACCGCAACTTTCACCGTAAGGAGGCGGATTCCTCCGCCGTGGTCGCCTTCTCCGGCGGGGACCCGTACTTAATTCCCCACCACCACCCGCCGCCGCAGTTTGCGGCGTACTACCGTCATCCGGCGGGGTATCTCCACGTGGCGGGACAGCAGCACCGTTCGGCGGTGGGGGGGACGCTGGCGCTGCCGTCGACGTCCGGCGGCGGCGGAACTCAGAGCACGCGTGAGGACCAGGAAGACATTTCGAACAATCCGAGTGCAGGAGGAACAGGGTCCAAGAAACGGTTCAGAACAAAATTCACTGTGGAGCAAAAGGAGAAAATGCTTGAACTTGCTGAAAAACTAGGGTGGAGGATTCAGAAACAGGACGAGGCTGTGGTCCAAGCCTTCTGCAACGAAACCGGTGTCAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACCCTCGGTAAGAAGCCCTAG 888 0.5766 MNEYTFGQRKHEGTERETLREREYETPTTRISQNLLNSIEKLTKLKEFREMEFEDQEEQEEELCMGGGGAGYDPTRMKVPVAAEPVRSTNGGGGRARYRECLKNHAVGIGGHALDGCGEFMAAGMEGTLDALKCAACSCHRNFHRKEADSSAVVAFSGGDPYLIPHHHPPPQFAAYYRHPAGYLHVAGQQHRSAVGGTLALPSTSGGGGTQSTREDQEDISNNPSAGGTGSKKRFRTKFTVEQKEKMLELAEKLGWRIQKQDEAVVQAFCNETGVKRHVLKVWMHNNKHTLGKKP* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0340 295 SUPERFAMILY Homeodomain-like 223 293 IPR009057 -
Gso2g0340 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 82 294 - -
Gso2g0340 295 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 97 147 IPR006456 -
Gso2g0340 295 MobiDBLite consensus disorder prediction 197 235 - -
Gso2g0340 295 MobiDBLite consensus disorder prediction 197 230 - -
Gso2g0340 295 MobiDBLite consensus disorder prediction 1 28 - -
Gso2g0340 295 Gene3D - 217 292 - -
Gso2g0340 295 Pfam ZF-HD protein dimerisation region 96 148 IPR006456 -
Gso2g0340 295 Coils Coil 39 59 - -
Gso2g0340 295 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 294 - -
Gso2g0340 295 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 232 288 IPR006455 -
Gso2g0340 295 MobiDBLite consensus disorder prediction 1 27 - -
Gso2g0340 295 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 98 147 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0340 Gso-Chr2 3705417 3706681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0340 51 291 ZF-HD Transcription Factor Family AT4G24660 50.407 2.74e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso2g0340 ZF-HD_dimer 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0340 - - gmx:100808910 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso2g0340 2 3705417 3706681 Gso2g0340 2 3705417 3706681 ECH