Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0332 ATGGAGGAAGCAATGAGGCGTCTCAACGGGGTAGCTCCGATTATCGGACCCGACTCGAAAGGCGACGGTGGACTCATCGCCAATAACCCGAAACGGACCTCGGCCGTGAACAAGAGGGCTTTAAGAGAAGACGGCGGCGGTGGTGGCGGCGGCGGAGCGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGGCGTTACGCGGCGGAGATAAGGGACCCTCAATCGAAGGAGCGGCGATGGCTGGGAACCTTCGACACGGCGGAGGAAGCCGCTTGCGCCTACGACTGCGCTGCTAGAGCCATGAGGGGTCTCAAAGCTCGCACCAACTTCGTTTACCCAACTTCTCCGCAACCTTCTTCCGCCACCACCGAACACTTGTTCCCTAACTTCAACAACAACAACAACTTTCACAAACACTCACTCTTCAATCACCACCGTAACCGCCACATAACCGGTTCCAACACTTGTTTTGACCAACCTCACTCCGTTGACTTTTCAGCCCCTCGAAACCCTTCTTCTCTCAACATGCTTCTCTTTCGTGACCTTATTCACTCTAACCCTTCTTTGCTTTCTTCTTCTTCCACTCAGAACTTCCACGACCAGTTTTACAACAAGAGTACTTCTACTTTTTCATCGTTACCTGTTTCTCCTTCTCTTGCTCCCCCTAGTTATTCGATGAATAATTCTTGTGGAGGAGGCTCTTTGTCTGTTAAGATGAACACGTTTCCCACTTGTGGAACTAATTTTGCTGAAAAAGGTGATGATGGTGATGGTTTTTTCTCTCGTGAGTCTTCGGATTCGGGGTTGTTGGAGGAGATAGTTAACAAGTTCTTGCCTAGAACGAAGCCTAGTAAATGCGAGACTACTTTTGCAAATCCTCAGGAGGAGTCGCTTCTTCTCCCTCCGCTTGTTTCTGAATCAACGCTTGTTTCCACCGGGCAACAATACTATGATGATGACATGAAAAAAGGGTTTCCAAAGAACGGGGGTCTAGGTGTTTTTTATTCTGATCAAGGTTTTCCCATGCAGCAATTCGACACCTCTAATGGGTTTAATAGCATGGCTATGGAGAATGATCAAAACATTATTAATAATGCAGAGAACTGTGTCGTTGAAGATGTTTTTCAGTACCAAGAGCTTCTTAATGCTTTCGCAATCAGAATGCAAAATGCTTAA 1179 0.4835 MEEAMRRLNGVAPIIGPDSKGDGGLIANNPKRTSAVNKRALREDGGGGGGGGAMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPQPSSATTEHLFPNFNNNNNFHKHSLFNHHRNRHITGSNTCFDQPHSVDFSAPRNPSSLNMLLFRDLIHSNPSLLSSSSTQNFHDQFYNKSTSTFSSLPVSPSLAPPSYSMNNSCGGGSLSVKMNTFPTCGTNFAEKGDDGDGFFSRESSDSGLLEEIVNKFLPRTKPSKCETTFANPQEESLLLPPLVSESTLVSTGQQYYDDDMKKGFPKNGGLGVFYSDQGFPMQQFDTSNGFNSMAMENDQNIINNAENCVVEDVFQYQELLNAFAIRMQNA* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0332 392 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 392 - -
Gso2g0332 392 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Gso2g0332 392 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Gso2g0332 392 CDD AP2 55 111 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 392 - -
Gso2g0332 392 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Gso2g0332 392 MobiDBLite consensus disorder prediction 8 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0332 Gso-Chr2 3593127 3594624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0332 54 362 AP2-EREBP Transcription Factor Family AT1G24590 34.557 7.06e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso2g0332 AP2 2.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso2g0332 - - gmx:100805376 726.087