Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso2g0329 ATGCCTCTTCTTCTCGCACGCACCCCACCATCCTCACTCTCTCCATTCCCTCTTCAAAACGCACGCGCGCCTCTAATCACTGCCTCTCAGAAGCGCTTCCCTCTTGCCGCAACTCGAATAGTTCTTTTCACTTCCCGGCGCAGCATTCTAGCATCCCCTCCTCCCAAGTGCGCCTCCATCAACGGAGTCTCTGTTCCGAACAATCCAGAAGCTTCCGGAGAAGAACAACAACAAATCTATAATGCTTCCGAGCTTCTCGAGCGGATTCGGAAATGGGTCGGGATTTTACCGTCGATTCTCCCCGGCGGACGGTGGTGGGAGTTCTCCGGCGACGTCGACGTTCAGGTGGTGGCGCAGCCGGTGACCGTGTGGCGCGCGCTCGGGAAAATGTGGGACCTTGTCGCGGGTGACAGATGGGTCATCTTCGCTGCATTCTCTGCTCTCATTGTTGCTGCAATTTCGGAGATTTCGATACCGCATCTCTTGACAGCATCAATCTTCTCAGCACAGAGTGCGGACCTTACTGTTTATCACCGGAATGTGCGGTTGTTGGTTCTGTTGTGCGTGGCTTCGGGAATATGCAGTGGGATACGAGGTTGCTTTTTTGGCATTGCAAACATGATTCTGGTTAAGAGAATGAGAGAAACACTATACTCTTCTCTTCTTCTGCAGGATATATCGTTTTTTGACAATGAAACAGTAGGTGATTTGACAAGTAGGCTTGGGGCGGATTGCCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAATTTGATAATGCGCAATGTTCTTCAGGGGGGAGGTTCATTAATCTACTTGTTGATTTTATCTTGGCCACTTGGCTTATCAACATTGGTGGTATGCTCCATATTAGCAGCAGTTATGTTACGCTATGGAAGGTACCAGAAAAAGGCCGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCAAATGATGTAGCCCAAGAGACATTCTCTCTGGTTAGAACTGTACGAGTTTATGGAACAGAAGAAGAAGAACATGGAAGGTATAAGTGGTGGCTGGAGAAATTAGCTGACATAAGCTTGCGACAAAGTGCTGCATATGGAGTTTGGAATTTTAGCTTTAACATTCTTTATCATTCAACTCAGGTTATTGCTGTGCTATTTGGAGGAATGTCTATTCTAGCAGGTCATATCACAGCCGAGAAACTTACCAAGTTTATATTATACAGTGAATGGTTAATTTATTCTACCTGGTGGGTGGGAGACAATATATCCAATTTGATGCAATCAGTTGGGGCTAGTGAAAAAGTATTCCACTTAATGGATCTCTTACCGAGCAGCCAATTCATAGAAAGAGGGGTAACATTGCAGAGGTTAACAGGGCGTATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGGCCAACGGTATCCGTAGTGCAACATGTGAACTTTGTTGTCTATCCTGGTGAGGTGGTTGCAATAGTTGGACTTAGTGGTAGTGGAAAAAGCACATTGGTGAATCTTTTGCTCCGTCTCTATGAGCCTACAAATGGTCAGATTTTGATAGATGATATCCCTCTTAAAGACTTGGACATCATGTGGTGGAGAGAGAGAGTTGGATTTGTGGGCCAGGAACCCAAACTCTTCCGAATGGATATTAGTTCAAACATAAGATATGGATGTACGCAAGATGTAAAGCAGGAGGATATTGAATGGGCTGCAAAGCAGGCCTATGCCCACAACTTTATCTCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGAGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCCTTCTTAGGGACCCAAAAATATTGATCCTTGATGAAGCCACTAGTGCACTAGATGCTGAAAGTGAGCATAATGTCAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCAACAAGAAGTGTCATAGTCATTGCACACAGGCTTTCTACCATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCACATTATTGAGATGGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTTTGTATGCACGGTTAACCAGAAAACAGGCTGATGCCATGGCATGA 2106 0.4516 MPLLLARTPPSSLSPFPLQNARAPLITASQKRFPLAATRIVLFTSRRSILASPPPKCASINGVSVPNNPEASGEEQQQIYNASELLERIRKWVGILPSILPGGRWWEFSGDVDVQVVAQPVTVWRALGKMWDLVAGDRWVIFAAFSALIVAAISEISIPHLLTASIFSAQSADLTVYHRNVRLLVLLCVASGICSGIRGCFFGIANMILVKRMRETLYSSLLLQDISFFDNETVGDLTSRLGADCQQVSRVIGNDLNLIMRNVLQGGGSLIYLLILSWPLGLSTLVVCSILAAVMLRYGRYQKKAARLIQEVTASANDVAQETFSLVRTVRVYGTEEEEHGRYKWWLEKLADISLRQSAAYGVWNFSFNILYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISNLMQSVGASEKVFHLMDLLPSSQFIERGVTLQRLTGRIEFLNVSFHYPSRPTVSVVQHVNFVVYPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDDIPLKDLDIMWWRERVGFVGQEPKLFRMDISSNIRYGCTQDVKQEDIEWAAKQAYAHNFISALPNGYETLVDDDLLSGGQKQRIAIARALLRDPKILILDEATSALDAESEHNVKGVLRSVRSDSATRSVIVIAHRLSTIQAADRIVVMDGGHIIEMGSHRELLLKDGLYARLTRKQADAMA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso2g0329 701 PANTHER ABC TRANSPORTER B FAMILY 81 700 - -
Gso2g0329 701 Pfam ABC transporter transmembrane region 176 408 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso2g0329 701 SMART AAA_5 484 672 IPR003593 -
Gso2g0329 701 Pfam ABC transporter 476 623 IPR003439 GO:0005524
Gso2g0329 701 SUPERFAMILY ABC transporter transmembrane region 129 439 IPR036640 GO:0005524|GO:0016021
Gso2g0329 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 457 695 IPR003439 GO:0005524
Gso2g0329 701 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 423 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso2g0329 701 ProSitePatterns ABC transporters family signature. 595 609 IPR017871 GO:0005524
Gso2g0329 701 CDD ABC_6TM_TAP 144 431 - -
Gso2g0329 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 696 IPR027417 -
Gso2g0329 701 Gene3D ABC transporter type 1, transmembrane domain 124 442 IPR036640 GO:0005524|GO:0016021
Gso2g0329 701 PANTHER ABC TRANSPORTER B FAMILY MEMBER 26, CHLOROPLASTIC 81 700 - -
Gso2g0329 701 Gene3D - 447 700 IPR027417 -
Gso2g0329 701 PIRSF ABC_prm/ATPase_B 46 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso2g0329 Gso-Chr2 3538487 3545730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso2g0329 212 699 Calmodulin-binding Proteins AT2G36910 34.406 6.43e-72 252